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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatcatgttttgattatatcttatatgccaattgatggcataatcatgagcctgtgcacttgttaaaatgttaagtctccctcttccatttttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTGCCTCTTTTGTTCCCTTCTTTCTTGACATTCCAATCACATCACGGTTCCG

Basic information

species Zea mays
transcript GRMZM2G157316_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157316_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g16330.1 (Oryza sativa), 3'ss of exon 4
aatcatgttttgattatatcttatatgccaattgatggcataatcatgagcctgtgcacttgttaaaatgttaagtctccct-----cttccattt-ttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTGCCTCTTTTGTTCCCTTCTTTCTTGACATTCCAATCACATCACGGTTCCG
     | ||  || |  |  || | |   ||||  ||    ||   |   | | |  | |||| |   | || ||  ||  |      |   |||| || ||||||| || || ||| ||||||| |||||||  || |||||||| || ||||||||||| ||  |||| |||||||||||||||||  |||||||||| || ||
---tttattgagagtgcagtttttgtcataattt-tgtggcaaatgttgacttttttatttgtcat--tattgagcttcttttgatattcttatttatttttgcagACACCAACTACCTCAGCACTCTTGCATGTGGACCTTATGGCCTTATATTTGCCTCATTCATTCCATTCTTTCTTGACATTCCTGTCACATCACGATTTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148962075|gb|EE012879.2|EE012879
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|76281436|gb|DV021004.1|DV021004
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71305646|gb|DR788962.1|DR788962
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71448463|gb|DR829513.1|DR829513
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|93014294|gb|EB639814.1|EB639814
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|149102614|gb|EE188245.2|EE188245
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71305918|gb|DR789090.1|DR789090
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGCCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|93013209|gb|EB638729.1|EB638729
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|148999432|gb|EE036384.2|EE036384
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|74237515|gb|DT645429.1|DT645429
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|50336165|gb|CO531291.1|CO531291
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|93013635|gb|EB639155.1|EB639155
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|149080963|gb|EE170059.2|EE170059
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|149105307|gb|EE290799.2|EE290799
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAAGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|86470247|gb|DY236617.1|DY236617
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71327756|gb|DR800512.1|DR800512
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|89762002|gb|DY689797.1|DY689797
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCCTTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCACGGCCTTATGGGCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgagcctgtgcacttgttaaaatgttaagtctccctcttccatttttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTGCCTCTTTTGTTCCCTTCTTTCTTGACATTCCAATCACATCACGGTTCCG
                              tctccctcttccattt  CT-rich tract
              ttgttaaaatgttaa  TA-rich tract