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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatcatgttttgattatatcttatatgccaattgatggcataatcatgagcctgtgcacttgttaaaatgttaagtctccctcttccatttttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTGCCTCTTTTGTTCCCTTCTTTCTTGACATTCCAATCACATCACGGTTCCG

Basic information

species Zea mays
transcript GRMZM2G157316_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157316_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g16330.1 (Oryza sativa), 3'ss of exon 4
aatcatgttttgattatatcttatatgccaattgatggcataatcatgagcctgtgcacttgttaaaatgttaagtctccct-----cttccattt-ttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTGCCTCTTTTGTTCCCTTCTTTCTTGACATTCCAATCACATCACGGTTCCG
     | ||  || |  |  || | |   ||||  ||    ||   |   | | |  | |||| |   | || ||  ||  |      |   |||| || ||||||| || || ||| ||||||| |||||||  || |||||||| || ||||||||||| ||  |||| |||||||||||||||||  |||||||||| || ||
---tttattgagagtgcagtttttgtcataattt-tgtggcaaatgttgacttttttatttgtcat--tattgagcttcttttgatattcttatttatttttgcagACACCAACTACCTCAGCACTCTTGCATGTGGACCTTATGGCCTTATATTTGCCTCATTCATTCCATTCTTTCTTGACATTCCTGTCACATCACGATTTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76282775|gb|DV022343.1|DV022343
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|74240575|gb|DT648489.1|DT648489
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|148951838|gb|EC897605.2|EC897605
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71305646|gb|DR788962.1|DR788962
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|78076078|gb|DV504512.1|DV504512
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|211167973|gb|FL398205.1|FL398205
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|93013635|gb|EB639155.1|EB639155
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|76017527|gb|DT944697.1|DT944697
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|93014294|gb|EB639814.1|EB639814
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71305918|gb|DR789090.1|DR789090
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGCCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71448463|gb|DR829513.1|DR829513
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|76281436|gb|DV021004.1|DV021004
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71433038|gb|DR814088.1|DR814088
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|76914066|gb|DV165397.1|DV165397
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|149046880|gb|EE048091.2|EE048091
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|74237515|gb|DT645429.1|DT645429
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|148962075|gb|EE012879.2|EE012879
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|149102614|gb|EE188245.2|EE188245
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|50336165|gb|CO531291.1|CO531291
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|74232244|gb|DT640158.1|DT640158
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|6020337|gb|AW065265.1|AW065265
EST:     ATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: ATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|148958569|gb|EC904813.2|EC904813
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|89762538|gb|DY690073.1|DY690073
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71450335|gb|DR831385.1|DR831385
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|149080963|gb|EE170059.2|EE170059
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|149105307|gb|EE290799.2|EE290799
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAAGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|148999432|gb|EE036384.2|EE036384
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|93013209|gb|EB638729.1|EB638729
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71417992|gb|DR804275.1|DR804275
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|148999920|gb|EE036969.2|EE036969
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|31354976|gb|CD439333.1|CD439333
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|86470247|gb|DY236617.1|DY236617
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71327756|gb|DR800512.1|DR800512
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|76281474|gb|DV021042.1|DV021042
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|89762002|gb|DY689797.1|DY689797
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCCTTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCACGGCCTTATGGGCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71438421|gb|DR819471.1|DR819471
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCACATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|149070467|gb|EE158870.2|EE158870
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 45 (downstream exon)
Score: 49

GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTGCCTCTTTTGTTCCCTTCTTTCTTGACATTCCAATCACATCACGGTTCCG


Block sizes: 46 (upstream exon), 45 (downstream exon)
Score: 59

GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTGCCTCTTTTGTTCCCTTCTTTCTTGACATTCCAATCACATCACGGTTCCG


Block sizes: 45 (upstream exon), 48 (downstream exon)
Score: 76

GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTGCCTCTTTTGTTCCCTTCTTTCTTGACATTCCAATCACATCACGGTTCCG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 95

GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTGCCTCTTTTGTTCCCTTCTTTCTTGACATTCCAATCACATCACGGTTCCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgagcctgtgcacttgttaaaatgttaagtctccctcttccatttttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTGCCTCTTTTGTTCCCTTCTTTCTTGACATTCCAATCACATCACGGTTCCG
                              tctccctcttccattt  CT-rich tract
              ttgttaaaatgttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aatcatgttttgattatatcttatatgccaattgatggcataatcatgagcctgtgcacttgttaaaatgttaagtctccctcttccatttttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTGCCTCTTTTGTTCCCTTCTTTCTTGACATTCCAATCACATCACGGTTCCG

- - -tgttttg
- - - - - - - - - - - -tatgcca
- - - - - - - - - - - - - - - attgatg
- - - - - - - - - - - - - - - - - - - - - - - - - cctgtgc