1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tagtggtgaacaaagatcttagttgggtattcaagctcatccctgagcagatttctttttgttcatcgtggtgctttacctctcatggtatactttgcagGCACGACAACTGCAAGAAAAAGGATGGAGACCAAGGTGGTTTAAGAAGGATGATGGCGACAGTTACCGCTATATGGGTGGATACTGGGAAGCGAGGGAGA
species | Zea mays |
transcript | GRMZM2G156608_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGAGATGGCAAATTCAGAGAAACTTAGGCTTGAACAACTGCAACGGCAG GCACGACAACTGCAAGAAAAAGGATGGAGACCAAGGTGGTTTAAGAAGGATEST: gi|60400940|gb|DN233747.1|DN233747
genomic: ATGAGATGGCAAATTCAGAGAAACTTAGGCTTGAACAACTGCAACGGCAGgtaaccaaca ... tactttgcagGCACGACAACTGCAAGAAAAAGGATGGAGACCAAGGTGGTTTAAGAAGGAT
EST: ATGAGATGGCAAATTCAGAGAAACTTAGGCTTGAACAACTGCAACGGCAG GCACGACAACTGC
genomic: ATGAGATGGCAAATTCAGAGAAACTTAGGCTTGAACAACTGCAACGGCAGgtaaccaaca ... tactttgcagGCACGACAACTGC
agcagatttctttttgttcatcgtggtgctttacctctcatggtatactttgcagGCACGACAACTGCAAGAAAAAGGATGGAGACCAAGGTGGTTTAAGAAGGATGATGGCGACAGTTACCGCTATATGGGTGGATACTGGGAAGCGAGGGAGA
atttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtggtgaacaaagatcttagttgggtattcaagctcatccctgagcagatttctttttgttcatcgtggtgctttacctctcatggtatactttgcagGCACGACAACTGCAAGAAAAAGGATGGAGACCAAGGTGGTTTAAGAAGGATGATGGCGACAGTTACCGCTATATGGGTGGATACTGGGAAGCGAGGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - -gaacaaa
- - - - - - - - - - - - - - - -caagctc
- - - - - - - - - - - - - - - - - - - atccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggtgc