Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctcttggaattttcttctgacacaaaaggaatgacccattctgctagtttctaacatgcagtcccttcgtttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG

Basic information

species Zea mays
transcript GRMZM2G155962_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155962_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g32150.1 (Oryza sativa), 3'ss of exon 4
gta-acctcttggaattttcttctgacacaaaaggaatgacccattctgctagtttctaacatgcagtcccttcgtttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG
||| |   ||||||| ||||     | ||  ||  | ||   ||  |    |||  || | ||    | | || | || || | ||||||| || ||||||||  |||||||||| ||||||||||| || |||||||||
gtacataccttggaactttccc---aaacctaaaaactggttcaaacctacagt--ctgatatatgattcatttgcttctcactagGAAAAGTATCGTGCTGTCCGGTTCAACCCCAACTTATGGCCGTCAGGTCAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93284051|gb|EB676315.1|EB676315
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
EST: gi|60397566|gb|DN230382.1|DN230382
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
EST: gi|211322966|gb|FL249424.1|FL249424
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACC-AAACTTATGGCCATCTGGT
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGT
EST: gi|20507977|gb|BQ279847.1|BQ279847
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
EST: gi|211322963|gb|FL249421.1|FL249421
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACMA                         GAAAAATACCGTGCTGTGAGGTTCAACCCA
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCA
EST: gi|21987683|gb|BQ779211.1|BQ779211
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGGACCA                         GAAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCA
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAA-TACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCA
EST: gi|76909087|gb|DV163216.1|DV163216
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
EST: gi|101390398|gb|EB817133.1|EB817133
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
EST: gi|211322965|gb|FL249423.1|FL249423
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGT
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGT
EST: gi|211322961|gb|FL249419.1|FL249419
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGT
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGT
EST: gi|26456812|gb|CA828395.1|CA828395
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
EST: gi|211322964|gb|FL249422.1|FL249422
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
EST: gi|78090807|gb|DV519181.1|DV519181
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
EST: gi|26558292|gb|CA830527.1|CA830527
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
EST: gi|76909089|gb|DV163217.1|DV163217
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
EST: gi|60357568|gb|DN224541.1|DN224541
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
EST: gi|211320798|gb|FL249415.1|FL249415
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
EST: gi|211320801|gb|FL249418.1|FL249418
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGSCATCTGGTCAA
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAA
EST: gi|211320800|gb|FL249417.1|FL249417
EST:     CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAA                         GAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGG
genomic: CTGCAGACGATGGGACTGGGATTAAACAGCTTGAACATCTGATTGTACAAgtaacctctt ... ttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaggaatgacccattctgctagtttctaacatgcagtcccttcgtttatccccagGAAAAATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG
                       ttctaac  putative branch site (score: 1)
                                    tcccttcgtttatccc  putative PPT
                      tttctaa  TA-rich tract