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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatagttttaatcctttttactagtttatttatgtttgatttaattaaacattctttcgctaaaactgctcttaactatttgcagCCCCAGGTAGCACAGTGCAAATTCACTGGTATATAATGACGAGTCCTTTTACCGATGAAGTGACCCGAAAGTTCTTTGAAACCCACAGATATTTTGGTTT

Basic information

species Zea mays
transcript GRMZM2G155729_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155729_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os08g10600.1 (Oryza sativa), 3'ss of exon 5
gtaaaatagttttaatcctttttactagtttatttatgtttgatttaattaaacattctttcgctaaaactgctcttaactatttgcagCCCCAGGTAGCACAGTGCAAATTCACTGGTATATAATGACGAGTCCTTTTACCGATGAAGTGACCCGAAAGTTCTTTGAAACCCACAGATATTTTGGTTT---------
||||  ||||           ||| | |||| ||||   ||   ||||  || ||    |||   |       | |||||| | |||| |||||||||   ||   ||||| ||||||||||||||||| || || ||||| ||||||| ||| ||||| || ||||||| ||||||||||||||| ||         
gtaatttagtcaagcatgccattaatggtttctttactcttt-cttaaaaaatcacatgttcaaca-------tgttaactttgtgcaaccccagGTACTCCA---CAAATACACTGGTATATAATGACTAGCCCCTTTACTGATGAAGCGACTCGAAAATTTTTTGAAAGCCACAGATATTTTGGCTTAGAGCCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74243750|gb|DT651664.1|DT651664
EST:     AGCTGAACGGATTTTATGTATTCAGAAGCTGGCTGCACAGTGCACTGATG                         CCCCAGGTAGCACAGTGCAAATTCACTGGTATATAATGACGAGTCCTTTTA
genomic: AGCTGAACGGATTTTATGTATTCAGAAGCTGGCTGCACAGTGCACTGATGgtaaaatagt ... ctatttgcagCCCCAGGTAGCACAGTGCAAATTCACTGGTATATAATGACGAGTCCTTTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtttgatttaattaaacattctttcgctaaaactgctcttaactatttgcagCCCCAGGTAGCACAGTGCAAATTCACTGGTATATAATGACGAGTCCTTTTACCGATGAAGTGACCCGAAAGTTCTTTGAAACCCACAGATATTTTGGTTT
                                       tcttaac  putative branch site (score: 2)
     ttgatttaattaaaca  TA-rich tract