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...ttcacttagctgccatgggaatatgttatcactttttgaggttcaaccaaaactccagcaagtcttaatagttttcatttcctctcccattgttgcttagGTATCGGGCTCCCATCTAGGAAGTCACTTTTCCAACTACAAGCTGAACGGATTTTATGTATTCAGAAGCTGGCTGCACAGTGCACTGATG
species | Zea mays |
transcript | GRMZM2G155729_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGACTAGGCTTGGCAGTTCTGACCCCAAGGGATGTTTCA GTATCGGGCTCCCATCTAGGAAGTCACTTTTCCAACTACAAGCTGAACGGAEST: gi|74243750|gb|DT651664.1|DT651664
genomic: GGGACTAGGCTTGGCAGTTCTGACCCCAAGGGATGTTTCAgtaagtcttc ... tgttgcttagGTATCGGGCTCCCATCTAGGAAGTCACTTTTCCAACTACAAGCTGAACGGA
EST: GTTCTGACCCCAAGGGATGTTTCA GTATCGGGCTCCCATCTAGGAAGTCACTTTTCCAACTACAAGCTGAACGGAEST: gi|33468149|gb|CF245198.1|CF245198
genomic: GTTCTGACCCCAAGGGATGTTTCAgtaagtcttc ... tgttgcttagGTATCGGGCTCCCATCTAGGAAGTCACTTTTCCAACTACAAGCTGAACGGA
EST: GGGACTAGGCTTGGCAGTTCTGACCCCAAGGGATGTTTCA GTATCGGGCTCCCATCTAGGAAGTCACTTTTCCAACTACAAGCTGAACGGAEST: gi|148942820|gb|EC887853.2|EC887853
genomic: GGGACTAGGCTTGGCAGTTCTGACCCCAAGGGATGTTTCAgtaagtcttc ... tgttgcttagGTATCGGGCTCCCATCTAGGAAGTCACTTTTCCAACTACAAGCTGAACGGA
EST: GGGACTAGGCTTGGCAGTTCTGACCCCAAGGGATGTTTCA GTATCGGGCTCCCATCTAGGAAGTCACTTTTCCAACTACAAGCTGAACGGA
genomic: GGGACTAGGCTTGGCAGTTCTGACCCCAAGGGATGTTTCAgtaagtcttc ... tgttgcttagGTATCGGGCTCCCATCTAGGAAGTCACTTTTCCAACTACAAGCTGAACGGA
accaaaactccagcaagtcttaatagttttcatttcctctcccattgttgcttagGTATCGGGCTCCCATCTAGGAAGTCACTTTTCCAACTACAAGCTGAACGGATTTTATGTATTCAGAAGCTGGCTGCACAGTGCACTGATG
tcttaat putative branch site (score: 55)
ttttcatttcctctcc putative PPT
ttaatagttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcacttagctgccatgggaatatgttatcactttttgaggttcaaccaaaactccagcaagtcttaatagttttcatttcctctcccattgttgcttagGTATCGGGCTCCCATCTAGGAAGTCACTTTTCCAACTACAAGCTGAACGGATTTTATGTATTCAGAAGCTGGCTGCACAGTGCACTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - -agctgcc
- - - - - - - - - - - - - - - - - - - - - -caaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - ctccagc