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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagttcagacgatttattctttcttcagctgcccttcacattcttcctaacacgagctactctttctggcatgcagATAGAAATGGCTCTCCTGTATCCAGGGCAGTGGTGCACGCTTGTCAGAATGCACCTTAG

Basic information

species Zea mays
transcript GRMZM2G155150_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155150_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g35190.1 (Oryza sativa), 3'ss of exon 8
gtgagagtt--cagacg-atttattctttcttcagctg--cccttcacattcttcctaacacgagctact----------ctttctggcatgcagATAGAAATGGCTCTCCTGTATCCAGGGCAGTGGTGCACGCTTGTCAGAATGCACCTTAG
|||| | ||  |  ||   ||||||| | |||  || |    | ||| |||  | | ||||  |   | |           |||||||||  ||||||||| |||| ||||||||||||||||   | | ||| || || || |||| ||| ||
gtgaaacttatcgtacttgtttattcgtccttgggcaggatacatcaaattactgccaacattaatcattaattagttttttttctggcacacagATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATGCGCCTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcagctgcccttcacattcttcctaacacgagctactctttctggcatgcagATAGAAATGGCTCTCCTGTATCCAGGGCAGTGGTGCACGCTTGTCAGAATGCACCTTAG
                       tcctaac  putative branch site (score: 1)
                                   ctactctttct  putative PPT