1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgccagtaaagaatactgcctctttgccaccataggctaaaattttacctattcagaaagcgttctaattgttgatccttacgatattgattttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG
species | Zea mays |
transcript | GRMZM2G154890_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAAGCTTGATGATTGCCGTGCTGAACTCCCCA-TCTCTTGAAAGAAGAG AGACAAGTTGGAGEST: gi|60337602|gb|DN204575.1|DN204575
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|60358498|gb|DN225471.1|DN225471
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|78112616|gb|DV531010.1|DV531010
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTTGAA-GAAGAG AGACTAGTTGGAGCTTCATTGTTGGGTTTTTGCAAATAAGCAAGACATACAEST: gi|5919346|gb|AW054443.1|AW054443
genomic: GAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTT-GAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGG-TTTTTGCAAATAAGCAAGACATACA
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCCCAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|60345034|gb|DN212007.1|DN212007
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|76016498|gb|DT943668.1|DT943668
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|5932640|gb|AW057001.1|AW057001
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|78082478|gb|DV510890.1|DV510890
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|60345576|gb|DN212549.1|DN212549
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|91874745|gb|EB404702.1|EB404702
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCCCAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|50335743|gb|CO530869.1|CO530869
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAEST: gi|76016499|gb|DT943669.1|DT943669
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAA
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTTGT-GGTTTTTGCAAATAAAGCA-GACATACEST: gi|78114766|gb|DV533154.1|DV533154
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATT-GTTGGTTTTTGCAAATAA-GCAAGACATAC
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCCCAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|211291158|gb|FL439700.1|FL439700
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|60336929|gb|DN203902.1|DN203902
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|19351517|gb|BM896049.1|BM896049
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|78112615|gb|DV531009.1|DV531009
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|78114767|gb|DV533155.1|DV533155
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|74239326|gb|DT647240.1|DT647240
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|86469538|gb|DY235908.1|DY235908
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: AGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTATTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATEST: gi|60339777|gb|DN206750.1|DN206750
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACAT
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|211435009|gb|FL439413.1|FL439413
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|71318962|gb|DR796230.1|DR796230
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|211350430|gb|FL481328.1|FL481328
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTSCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|5770292|gb|AI973466.1|AI973466
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|32945513|gb|CF050332.1|CF050332
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAGGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGEST: gi|50339680|gb|CO534806.1|CO534806
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
EST: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAG AGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATCCAG
genomic: GGAGGCTTGATGATTGCCGTGCTGAACTCCACAATCTCTTGAAAGAAGAGgtatgctata ... attttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAG
ttacctattcagaaagcgttctaattgttgatccttacgatattgattttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG
atattgattttaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgccagtaaagaatactgcctctttgccaccataggctaaaattttacctattcagaaagcgttctaattgttgatccttacgatattgattttaacagAGACTAGTTGGAGCTTCATTGTTGGTTTTTGCAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - gtaaagaa
- - - - - - - tactgcc
- - - - - - - - - - - - - -ccaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat