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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatataccttgattgtaaaatgttcctttcacatttctttagtcctgtgcattcttctccttttttgtgaagttttttctatcttttctcattgccagACAACAACAAAGAAAAAAATTTCTTCAACATTCAGTTTCCCAGGACAACTTGATTTGGGAAAACGATTATCAGAGCCTTCATCTAGTTGCACTTATGCCT

Basic information

species Zea mays
transcript GRMZM2G154621_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31358288|gb|CD442645.1|CD442645
EST:     TTCCTCCAGTTGTCAATTTTCAACTGAAGCGTTATGTATTCCTCCCGAAG                         ACAACAACAAAGNNNNNNNTTTCTTCAACATTCAGTTTCCCAGGACAACTT
genomic: TTCCTCCAGTTGTCAATTTTCAACTGAAGCGTTATGTATTCCTCCCGAAGgtaatatacc ... tcattgccagACAACAACAAAGAAAAAAATTTCTTCAACATTCAGTTTCCCAGGACAACTT
EST: gi|71757284|gb|DR955221.1|DR955221
EST:     TTCCTCCAGTTGTCAATTTTCAACTGAAGCGTTATGTATTCCTCCCGAAG                         ACAACAACAAAGNNNNNNNTTTCTTCAACATTCAGTTTCCCAGGACAACTT
genomic: TTCCTCCAGTTGTCAATTTTCAACTGAAGCGTTATGTATTCCTCCCGAAGgtaatatacc ... tcattgccagACAACAACAAAGAAAAAAATTTCTTCAACATTCAGTTTCCCAGGACAACTT
EST: gi|31358736|gb|CD443093.1|CD443093
EST:     TTCCTCCAGTTGTCAATTTTCAACTGAAGCGTTATGTATTCCTCCCGAAG                         ACAACAACAAAGNNNNNNNTTTCTTCAACATTCAGTTTCCCAGGACAACTT
genomic: TTCCTCCAGTTGTCAATTTTCAACTGAAGCGTTATGTATTCCTCCCGAAGgtaatatacc ... tcattgccagACAACAACAAAGAAAAAAATTTCTTCAACATTCAGTTTCCCAGGACAACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgtgcattcttctccttttttgtgaagttttttctatcttttctcattgccagACAACAACAAAGAAAAAAATTTCTTCAACATTCAGTTTCCCAGGACAACTTGATTTGGGAAAACGATTATCAGAGCCTTCATCTAGTTGCACTTATGCCT
                             ttttttctatcttttc  CT-rich tract
                             ttttttctatctttt  TA-rich tract