ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

gttactgtcctttcctatagccacaataaagtttccatgtttatctgtggtccagtgtccatactaaactgtactgggatataatataagcatacgtcacccaaaaaaaaatggatgaaatggcatatgccatttatatgacacgcaaccttaaatccgccaactgactctgtcgtttccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGAT

Basic information

species	Zea mays
transcript	GRMZM2G153991_T01
intron #	4
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G153991_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g68710.3 (Oryza sativa), 3'ss of exon 3

gttactgtcctttcctatagccacaataaagtt-tccatgtttatctgtggtccagtgtccatactaaactgtactgggatataatataagcatacgtcacccaaaaaaaaatggatgaaatggcatatgccatttatatgacacgcaaccttaaatccgccaactgactctgtcgtttccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGAT
|||| |    || |||  |   | | | || || ||||| ||||||  | |||||       |||| |  |    ||    || |   | |   | || | |     |||||| |  |||||||  | |||  || |||| |   ||   |  | ||||  ||||  ||  ||| ||||  |||| |||||||||||||||| || || |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||
gttattccttttccctgga---atactgaacttctccatatttatccatagtcca-------tactgaggtagcttga---atgaccaagg---atgttatc-----aaaaatag--gaaatggactgtgcagttcatatcaatggccttcgcatatccaacaacctacattgttgtttttatctatagGTTGGGACCAAGGGTTACTAGGTATGTGTGTCGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGGGAGAGAGGCTCCCCACCGAAGAT

upper sequence: GRMZM2G153991_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv00s0260g00060.t01 (Vitis vinifera), 3'ss of exon 4

gttactgtcctttcctatagccacaataaagtttccatgtttatctgtggtccagtgtccatactaaactgtactgggatataatataagcatacgtcacccaaaaaaaaatggatgaaatggcatatgccatttatatgacacgcaaccttaaatccgccaactgactctgtcgtttccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGAT
                                                                                |    |     ||| | ||   ||      || | ||   ||    |   |||| | |||    |   | ||  ||   | |||  |       || | | | || ||| ||||||||||||||| | || ||||| |||||||| ||| | ||||| || |||||||||||  | |||||||| |  |  || || || || |||||
--------------------------------------------------------------------------------actccactcatatatgacaatgaagcttccattgttggt-tgaaccagagcattgagatggtg-gagtcattggatgtcctaacaaat------gtcttcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGAAAATACCTGCAAAACTTGGTTATGGGGCCCAGGGGTCTCCTCCTAAGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211034324|gb|FL376241.1|FL376241

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211117648|gb|FL049547.1|FL049547

EST:     AGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCCAAGTGATAAAAG                         GTTGGGAGCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: AGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCC-AAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|30031799|gb|CB833650.1|CB833650

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|91054743|gb|EB165161.1|EB165161

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|24773940|gb|CA409194.1|CA409194

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|149005134|gb|EE039667.2|EE039667

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|22819346|gb|BU499436.1|BU499436

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|148931677|gb|EC874859.2|EC874859

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211150009|gb|FL374643.1|FL374643

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|30031800|gb|CB833651.1|CB833651

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211117646|gb|FL049545.1|FL049545

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACTAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211205079|gb|FL419130.1|FL419130

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211117644|gb|FL049543.1|FL049543

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211117643|gb|FL049542.1|FL049542

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211116864|gb|FL049538.1|FL049538

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211117642|gb|FL049541.1|FL049541

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211082659|gb|FL412223.1|FL412223

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|61117990|gb|DN558951.1|DN558951

EST:     GGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: GGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211117649|gb|FL049548.1|FL049548

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|18179873|gb|BM381083.1|BM381083

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|116823847|gb|EC867424.1|EC867424

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|61117991|gb|DN558952.1|DN558952

EST:     ACTCTTGGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: ACTCTT-GGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211117645|gb|FL049544.1|FL049544

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211116862|gb|FL049536.1|FL049536

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|22542120|gb|BU092558.1|BU092558

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211079084|gb|FL380731.1|FL380731

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|6828177|gb|AW331820.1|AW331820

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|61117992|gb|DN558953.1|DN558953

EST:     CAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|61117989|gb|DN558950.1|DN558950

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|18179296|gb|BM380506.1|BM380506

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|32865924|gb|CF005606.1|CF005606

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211453697|gb|FL370753.1|FL370753

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCGAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|149090104|gb|EE179400.2|EE179400

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211389797|gb|FL380127.1|FL380127

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|21987364|gb|BQ778892.1|BQ778892

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211122276|gb|FL373651.1|FL373651

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|149071444|gb|EE159839.2|EE159839

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|149005133|gb|EE039666.2|EE039666

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|60399310|gb|DN232124.1|DN232124

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|211059587|gb|FL481931.1|FL481931

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCG-GGGT
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGT

EST: gi|149071445|gb|EE159840.2|EE159840

EST:     CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

EST: gi|24773190|gb|CA408444.1|CA408444

EST:     CAGAGGTGACCCGTTTGAATTCACCCTTGGAAATGGCCAAGTGATAAAAG                         GTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA
genomic: CAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 315

GGGACACTCACTGATGGATCAGTTTTCGATTCTAGCTATGACAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAGgttactgtcc ... ccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGAT

Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 474

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 562

Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 585

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

ttatatgacacgcaaccttaaatccgccaactgactctgtcgtttccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGAT

                            aactgac  putative branch site (score: 585)
                                          tttccatct  putative PPT
                 ttaaat  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttactgtcctttcctatagccacaataaagtttccatgtttatctgtggtccagtgtccatactaaactgtactgggatataatataagcatacgtcacccaaaaaaaaatggatgaaatggcatatgccatttatatgacacgcaaccttaaatccgccaactgactctgtcgtttccatctgtagGTTGGGACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG