Sequence
atgc intronic sequence ATGC exonic sequence...gtttgttccttgaatgctttattaggccactttggcatcatctcatgtaaataaatgatctgcattatggtcatatatctaacttcctctgatgctgtagATCTTGCTTAAAGGTGCTAATGGTGATGAGCTAAAAAAGGTGAAGCATGTTTTGCAATATGGAGTATTTGCAGCCTACCATTTGGCACTTGAAACATCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G153722_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g34950.1 (Oryza sativa), 3'ss of exon 4
gtttgttccttgaatg-ctttattaggccactttggcatcatctcatgtaaataaatgatctgcattatggtca----tatat-ctaacttcctctgatgctgtagATCTTGCTTAAAGGTGCTAATGGTGATGAGCTAAAAAAGGTGAAGCATGTTTTGCAATATGGAGTATTTGCAGCCTACCATTTGGCACTTGAAACATCAT
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---cgcttcacgatcaacgttaatac-ttactctagtactttacgaaagaattgaataataaa-attgaagtcaatttcatgtgctaactattcctaat-ctgtagATATTGCTCAAAGGAGCTAATGGCGATGAGCTGAAAAAAGTGAAGCATGTTGTGCAATATGGAGTCTTTGCAGCCTATCACTTGGCTCTGGAAACATCTT
upper sequence: GRMZM2G153722_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA13G17510.1 (Glycine max), 3'ss of exon 4
--gtttgttccttgaatgctttattaggccactttggcatcatctcatgtaaataaatgatctgcattatggtcatatatctaacttcctctgatgctgtagATCTTGCTTAAAGGTGCTAATGGTGATGAGCTAAAAAAGGTGAAGCATGTTTTGCAATATGGAGTATTTGCAGCCTACCATTTGGCACTTGAAACATCAT
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taatttgtaaa--gaaaagttgagttgtttgttgctttactatttctccccctccatatttttatttatttattatgtgtatttttttgctttactttgaagATCTTGCTGAAGGGTGCCAATGGGGATGAGTTGAAGAAGGTGAAACATGTGATCCAATATGGAATCTTTGCAGCCTATCATCTGGCACTGGAGACATCTT
upper sequence: GRMZM2G153722_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA17G05000.1 (Glycine max), 3'ss of exon 7
---gtttgttccttgaatgctttattaggccactttggcatcatctcatgtaaataaatgatctgcattatggtcatatatctaacttcctctgatgctgtagATCTTGCTTAAAGGTGCTAATGGTGATGAGCTAAAAAAGGTGAAGCATGTTTTGCAATATGGAGTATTTGCAGCCTACCATTTGGCACTTGAAACATCAT
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aggacttgtaaagaaaagttgttgtttg-ttgcttttctatttctcctcctctatatttttatttatttattat-gtgtattttttttgctttact-ttgaagATCTTGCTGAAGGGTGCCAATGGGGATGAGTTGAAGAAGGTGAAACATGTGATCCAATATGGAATCTTTGCAGCCTATCATCTGGCGCTGGAGACATCTT
upper sequence: GRMZM2G153722_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT4G33240.1 (Arabidopsis thaliana), 3'ss of exon 5
----------------------------------gtttgttccttgaatgctttattaggccactttggcatcatctcatgtaaataaatgatctgcattatggtcatatatctaacttcctctgatgctgtagATCTTGCTTAAAGGTGCTAATGGTGATGAGCTAAAAAAGGTGAAGCATGTTTTGCAATATGGAGTATTTGCAGCCTACCATTTGGCACTTGAAACATCAT
|| | ||||||| || | | | | || || | | |||| |||| | |||||| | |||| ||| ||| |||| ||||| || || || ||| ||||||||||| |||||||| ||||| | || |||||||| |||||||| || || ||||| ||||| ||||| |
gtaagttccacaacattttaaggtgttttaagacattagatccttgacctgttattatgactatgcatattgtatgtctgatcaggaaataatcttaagtatggtgcttgatctgtctttctc---------agATATTGCTCAAGGGGGCACATGAAGATGAGCTAAAGAAGGTGAAACATGTGATTCAGTATGGAGTTTTTGCAGCATATCACTTGGCTCTTGAGACATCCT
upper sequence: GRMZM2G153722_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT3G14270.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttgt-tccttgaatgctttattaggccactttggcatcatctcatgtaaataaatgatctgcattatggtcatatatctaacttcctctgatgctgtagATCTTGCTTAAAGGTGCTAATGGTGATGAGCTAAAAAAGGTGAAGCATGTTTTGCAATATGGAGTATTTGCAGCCTACCATTTGGCACTTGAAACATCAT
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gtaagcattcccaactattagaatttaatacacagaccagattttatattattgcctcatg-atattacc-tcttgctttttatgtcccttctt-cttcagATTTTGCTGAGGGGTGCAAATGAAGATGAGTTGAAAAAAGTGAAGCATGTGGTCCAGTATGGAGTTTTTGCAGCTTATCATTTGGCACTCGAAACATCGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtaaataaatgatctgcattatggtcatatatctaacttcctctgatgctgtagATCTTGCTTAAAGGTGCTAATGGTGATGAGCTAAAAAAGGTGAAGCATGTTTTGCAATATGGAGTATTTGCAGCCTACCATTTGGCACTTGAAACATCAT
cttcctctg CT-rich tract
atatatctaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgttccttgaatgctttattaggccactttggcatcatctcatgtaaataaatgatctgcattatggtcatatatctaacttcctctgatgctgtagATCTTGCTTAAAGGTGCTAATGGTGATGAGCTAAAAAAGGTGAAGCATGTTTTGCAATATGGAGTATTTGCAGCCTACCATTTGGCACTTGAAACATCAT
- -tgttcct
- - - - - tgaatgc
- - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcatt