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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacgtttcgttccacggcatatcggataattatatcgtcaggcactgtacgtacggcagcttgactgtttcgttcgttcgtgcgtgcagAGGCTGGTGGTGAAGACCAAGAGCGTGGAGTACATGCCGTTCCTGCTGTCGCTGGCCGTGTTCCTGTGCGGCACGTCCTGGTTCGTCTACGGCCTGCTCG

Basic information

species Zea mays
transcript GRMZM2G153358_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153358_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g35140.1 (Oryza sativa), 3'ss of exon 4
-gtatacgtttcgttccacggc--atatcggataattatatcgtcaggcactgtacgtacggcagcttgactgtttcgttc-----gttcgtgcgtgcagAGGCTGGTGGTGAAGACCAAGAGCGTGGAGTACATGCCGTTCCTGCTGTCGCTGGCCGTGTTCCTGTGCGGCACGTCCTGGTTCGTCTACGGCCTGCTCG
       | |    || ||  |  | | |||| | || |    |  |     ||    |   |    |  ||| || |||      ||   |   |||||||||||||| | ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||
tacggcggctaaactcaactcctaacagcggaaacttcttggattggatttcgtggcgattacttgcttgctgattggttttcatggtgaatcgatgcagAGGCTGGTGATCAAGACGAAGAGCGTGGAGTACATGCCGTTCCTGATGTCGCTGGCCGTGTTCCTGTGCGGCACGTCGTGGTTCATCTACGGCTTGCTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtcaggcactgtacgtacggcagcttgactgtttcgttcgttcgtgcgtgcagAGGCTGGTGGTGAAGACCAAGAGCGTGGAGTACATGCCGTTCCTGCTGTCGCTGGCCGTGTTCCTGTGCGGCACGTCCTGGTTCGTCTACGGCCTGCTCG
                        gcttgac  putative branch site (score: 4)