1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtataatttagaagctcaactcagtttattgcttgaacattttcaattagctcatttggtttgtggtgtgtttgacaagattatgatcttatgtttctgcctggcagCGTGCTGGAGCTGAATTCCCCAAGAGACCAGAGAAACCTGCACCTTTGTTTAATGGTCAGTCTCAAGCAGCAAGGAATATGCGTAGTCCTGACCAACAGG
species | Zea mays |
transcript | GRMZM2G153138_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACCACGTGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTG CGTGCTGGAGCTCAATTCCCCAAGAGACCAGAGAAACCTGCACCTTTGNTTEST: gi|18963194|gb|BM660294.1|BM660294
genomic: GACCACGTGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTGgtataattta ... tgcctggcagCGTGCTGGAGCTGAATTCCCCAAGAGACCAGAGAAACCTGCACCTTTGTTT
EST: GACCACGTGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTG CGTGCTGGAGCTCAATTCCCCAAGAGACCAGAGAAACCTGCACCTTTGTTTEST: gi|42491897|gb|CK700943.1|CK700943
genomic: GACCACGTGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTGgtataattta ... tgcctggcagCGTGCTGGAGCTGAATTCCCCAAGAGACCAGAGAAACCTGCACCTTTGTTT
EST: GACCACGTGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTG CGTGCTGGAGCTGAATTCCCCAAGAGACCAGAGAEST: gi|18662217|gb|BM501806.1|BM501806
genomic: GACCACGTGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTGgtataattta ... tgcctggcagCGTGCTGGAGCTGAATTCCCCAAGAGACCAGAGA
EST: GACCACGTGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTG CGTGCTGGAGCTCAATTCCCCAAGAGACCAGAGAAACCTGCACCTTT
genomic: GACCACGTGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTGgtataattta ... tgcctggcagCGTGCTGGAGCTGAATTCCCCAAGAGACCAGAGAAACCTGCACCTTT
catttggtttgtggtgtgtttgacaagattatgatcttatgtttctgcctggcagCGTGCTGGAGCTGAATTCCCCAAGAGACCAGAGAAACCTGCACCTTTGTTTAATGGTCAGTCTCAAGCAGCAAGGAATATGCGTAGTCCTGACCAACAGG
gtttgac putative branch site (score: 426)
tttctgcct putative PPT
aagattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatttagaagctcaactcagtttattgcttgaacattttcaattagctcatttggtttgtggtgtgtttgacaagattatgatcttatgtttctgcctggcagCGTGCTGGAGCTGAATTCCCCAAGAGACCAGAGAAACCTGCACCTTTGTTTAATGGTCAGTCTCAAGCAGCAAGGAATATGCGTAGTCCTGACCAACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA