Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacaatacaactcaaagcaagcaagcatcagcgccgtcgttgtcttcacaagttctatgagaaggaacggatcggagccttccagagtaacgtacggttcttccatggcatttggtttaatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG

Basic information

species Zea mays
transcript GRMZM2G152477_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152477_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g13540.1 (Oryza sativa), 3'ss of exon 5
gtatacaatacaactcaaagcaagcaagcatcagcgccgtcgttgtcttcacaagttctatgagaaggaacggatcggagccttccagagtaacgtacggttcttccatggcatttggtttaatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG
                                         ||| |   || |||||   |    |  || |    | ||  | |   |  |  ||||  ||| |        |||  |  |||||| ||| ||| ||| |||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
-----------------------------------------gttata--cagaagttgcctcgatattaa-gttctgaaggatccacaaaaagagtac--ttccttatcactgtttcatggaatttc-agGTCAATGGCATCGACTTCTACATCAATGGGCACGACCACTGCCTGGAACACATTAGCAGCAGAGACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37388405|gb|CF631411.1|CF631411
EST:     ACTGCAGCTACTGCTTCCAGTCCTCCAG                         GCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|148966045|gb|EE016979.2|EE016979
EST:     ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAG                         GCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|16927228|gb|BM080297.1|BM080297
EST:     ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAG                         GCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|32845008|gb|CD984689.1|CD984689
EST:     ATCATGGTGACGCCAAGGAGCTAGTGCAGCTACTGCTTCCAGTCCTACAG                         GCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|37426126|gb|CF650813.1|CF650813
EST:     ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAG                         GCCAACGGCGTCGATTTCTACATCAACGGG
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGG
EST: gi|32845140|gb|CD984821.1|CD984821
EST:     ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAG                         GCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|32844554|gb|CD984235.1|CD984235
EST:     ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAG                         GCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|50335509|gb|CO530635.1|CO530635
EST:     ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAG                         GCCAACGGCGTCGATTTTTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|78114010|gb|DV532399.1|DV532399
EST:     ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAG                         GCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|32844045|gb|CD983726.1|CD983726
EST:     ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAG                         GCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|37393857|gb|CF634195.1|CF634195
EST:     ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAG                         GCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|71430080|gb|DR811130.1|DR811130
EST:     ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAG                         GCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|76012839|gb|DT940009.1|DT940009
EST:     ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAG                         GCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|211405854|gb|FK952121.1|FK952121
EST:     ACTGCTTCCAGTCCTCCAG                         GCCAAC-GSGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|32835913|gb|CD975591.1|CD975591
EST:     ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAG                         GCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|18162089|gb|BM331928.1|BM331928
EST:     ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTGCAGTCCTCCAG                         GCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|71767916|gb|DR965853.1|DR965853
EST:     ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAG                         GCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
EST: gi|76289548|gb|DV029116.1|DV029116
EST:     ATCATGGTGACACCAAGGAGCTACTGCAGTTACTGCTTCCAGTCCTCCAG                         GCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC
genomic: ATCATGGTGACACCAAGGAGCTACTGCAGCTACTGCTTCCAGTCCTCCAGgtatacaata ... taatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggagccttccagagtaacgtacggttcttccatggcatttggtttaatttccagGCCAACGGCGTCGATTTCTACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG
                                                tttcc  CT-rich tract
                                     atttggtttaattt  TA-rich tract