Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacaaacaaacaaatttcgcattcgcatttcctcaatcaaggtctgctcacgattttgcttgcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCACAGGAAATGCTTCTAATTCTTTGGGCCCGAGAAATGCAAGCCGTGGGGGA

Basic information

species Zea mays
transcript GRMZM2G152328_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152328_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g50885.1 (Oryza sativa), 3'ss of exon 3
gtaaa---acaaacaaacaaatttcgcattcgcatttcctcaatcaa---ggtctgctcacgattttgcttgcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCACAGGAAATGCTTCTAATTCTTTGGGCCCGAGAAATGCAAGCCGTGGGGGA
|||||   |||||   |  ||| | |  |    |  || | ||         | |||| || || ||||||||   ||||||||||||| |||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||| || ||| ||||    |||||  | ||  
gtaaatatacaaatgcagcaatgtagtgtgtttacctcatgaacttgatcaatttgcttacaatgttgcttgccgttgcagATGTGGATTGCCAAGGCTGAGTACGACGAGTCTGGCCCATCCATTGTGCACAGGAAATGCTTCTAATTCTTCGGACCCAAGAATGCTAAGCCAAGAGGAG

upper sequence: GRMZM2G152328_T01 (Zea mays), 3'ss of exon 4
lower sequence: PP1S337_26V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------------------gtaaaacaaacaaacaaatttcgcattcgcatttcctcaatcaaggtctgctcacgattttgcttgcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCACAGGAAATGCTTCTAATTCTTTGGGCCCGAGAAATGCAAGCCGTGGGGGA
                           ||   |   | || |  ||||     |  | |||   || |  |  |    |      | |    |    |||||||||||||||| ||| | ||||||||||| ||||||||||| || || ||  |||||||||| ||      |||    |     |            |  
gtatttcttttatattacagttgcttagttgcatgcataatctgatttttatattacttttttgcattttatctgcattttgacgtgttggggtttttgcagATGTGGATCGCGAAGTCGGAGTACGACGAATCCGGCCCATCAATTGTGCATCGGAAATGCTTTTAGACGCGTGGTGATGGAGTCTTTTTTTATCACCGTG

upper sequence: GRMZM2G152328_T01 (Zea mays), 3'ss of exon 4
lower sequence: EFJ35077 (Selaginella moellendorffii), 3'ss of exon 3
gtaaaacaaacaaacaaatttcgcattcgcatttcctcaatcaaggtctgctcacgattttgcttgcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCACAGGAAATGCTTCTAATTCTTTGGGCCCGAGAAATGCAAGCCGTGGGGGA
         || | |||  |||   | | | |||     |||| |   || |     ||||  ||      |||||||||||| || ||| |||||||||| ||||| || ||||| || || ||||| || ||||||||                                   
-------gtacca-caacattcttttgctcgtttttcttatca-gccttgtttttctttttcttttt--tcgcagATGTGGATTGCAAAGTCCGAGTACGATGAGTCGGGTCCATCGATTGTGCACAGAAAGTGCTTCTAG----------------------------------

upper sequence: GRMZM2G152328_T01 (Zea mays), 3'ss of exon 4
lower sequence: EFJ17401 (Selaginella moellendorffii), 3'ss of exon 3
gtaaaacaaacaaacaaatttcgcattcgcatttcctcaatcaaggtctgctcacgattttgcttgcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCACAGGAAATGCTTCTAATTCTTTGGGCCCGAGAAATGCAAGCCGTGGGGGA
         || | |||  |||   | | | |||     ||||   |    |  |  ||| | ||      |||||||||||| || ||| |||||||||| ||||| || ||||| || || ||||| || ||||||||                                   
-------gtacca-caacattcttttgctcgtttttcttatcagccttgtttttctttttcgtttct---cgcagATGTGGATTGCAAAGTCCGAGTACGATGAGTCGGGTCCATCGATTGTGCACAGAAAGTGCTTCTAG----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6973470|gb|AW438164.1|AW438164
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|21330872|gb|BQ486253.1|BQ486253
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|32796017|gb|CD948253.1|CD948253
EST:     GATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|211286444|gb|FL194276.1|FL194276
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|12969074|gb|BG266019.1|BG266019
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|21330551|gb|BQ485932.1|BQ485932
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|7138066|gb|AW499412.1|AW499412
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|4647346|gb|AI622421.1|AI622421
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCCCCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCCC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|14243303|gb|BG840962.2|BG840962
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|7238178|gb|AW573400.1|AW573400
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|211286445|gb|FL194277.1|FL194277
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|32911162|gb|CF015974.1|CF015974
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|6095303|gb|AW119970.1|AW119970
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGNCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|4646834|gb|AI621909.1|AI621909
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCCCCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|32870353|gb|CF010035.1|CF010035
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|116825471|gb|EC869195.1|EC869195
EST:     GGCATCCCTCACCA-CTTCCAGCAG                         ATGTGGATCGCCAA-GCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|4966500|gb|AI691356.1|AI691356
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|60353525|gb|DN220498.1|DN220498
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|16926294|gb|BM079362.1|BM079362
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|21330795|gb|BQ486176.1|BQ486176
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|6865320|gb|AW360670.1|AW360670
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|78024294|gb|DV492681.1|DV492681
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|7227828|gb|AW566469.1|AW566469
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|14311638|gb|BG901393.1|BG901393
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|9952797|gb|BE639380.1|BE639380
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|21331078|gb|BQ486459.1|BQ486459
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGACCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|21330362|gb|BQ485743.1|BQ485743
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGNCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|22545333|gb|BU097692.1|BU097692
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|32164926|gb|CD670244.1|CD670244
EST:     TGTCTGGATCGGAGGATCCATCCTGGCGATCC-TCAGCACCTTCCAGCAG                         ATGTGGATCGCC
genomic: TGTCTGGATCGGAGGATCCATCCTGGC-ATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCC
EST: gi|903272|gb|H35875.1|H35875
EST:     GTGTCTGGATCGGAGGATACATCCTGGCATCCCTCAGCACCTTCCAGNAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|32164925|gb|CD670243.1|CD670243
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
EST: gi|14311492|gb|BG901247.1|BG901247
EST:     GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAG                         ATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC
genomic: GTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 649

TCCCAGCAGCATGAAGATCAAGGTGGTCGCTCCTCCAGAGAGGAAGTACAGTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCACAGGAAATGCTTCTAATTCTTTGGGCCCGAGAAATGCAAGCCGTGGGGGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 116

TCCCAGCAGCATGAAGATCAAGGTGGTCGCTCCTCCAGAGAGGAAGTACAGTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCACAGGAAATGCTTCTAATTCTTTGGGCCCGAGAAATGCAAGCCGTGGGGGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 60

TCCCAGCAGCATGAAGATCAAGGTGGTCGCTCCTCCAGAGAGGAAGTACAGTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCACAGGAAATGCTTCTAATTCTTTGGGCCCGAGAAATGCAAGCCGTGGGGGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2474

TCCCAGCAGCATGAAGATCAAGGTGGTCGCTCCTCCAGAGAGGAAGTACAGTGTCTGGATCGGAGGATCCATCCTGGCATCCCTCAGCACCTTCCAGCAGgtaaaacaaa ... gcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCACAGGAAATGCTTCTAATTCTTTGGGCCCGAGAAATGCAAGCCGTGGGGGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgcattcgcatttcctcaatcaaggtctgctcacgattttgcttgcgactgcagATGTGGATCGCCAAGGCCGAGTACGACGAGTCCGGCCCATCCATCGTCCACAGGAAATGCTTCTAATTCTTTGGGCCCGAGAAATGCAAGCCGTGGGGGA
                            tgctcac  putative branch site (score: 2474)
                                    atttt  TA-rich tract