1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgcgcgagtggtgtggcccttcttcttttgtcctcgcattgcctgtgaatccgcgatcctctgcgactgacgtctgtggctgtggctgtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTGAAGCTACTGATACTGAAGACGCAGGAGAAGAAAAGACGCGTCCAGTTG
species | Zea mays |
transcript | GRMZM2G152135_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|15554267|gb|BI644265.1|BI644265
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCC-GGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|211378788|gb|FL471300.1|FL471300
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|149204930|gb|ES700526.1|ES700526
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|211485805|gb|FL428178.1|FL428178
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|211047719|gb|FL481049.1|FL481049
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: CATGGACAAGTTCGGCGGCGTCCCGTATTGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTTGTTAGCAGTCCGGTGAGEST: gi|18181362|gb|BM382572.1|BM382572
genomic: CATGGACAAGTTCGGCGGCGTCCCGTA-TGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGC-TTGTTAGCAGTCCGGTGAG
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGAAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|211354968|gb|FL469254.1|FL469254
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|148929072|gb|EC874391.2|EC874391
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGGGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|194717072|gb|FK934225.1|FK934225
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|211070680|gb|FL369853.1|FL369853
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
ctgtgaatccgcgatcctctgcgactgacgtctgtggctgtggctgtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTGAAGCTACTGATACTGAAGACGCAGGAGAAGAAAAGACGCGTCCAGTTG
gactgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcgagtggtgtggcccttcttcttttgtcctcgcattgcctgtgaatccgcgatcctctgcgactgacgtctgtggctgtggctgtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTGAAGCTACTGATACTGAAGACGCAGGAGAAGAAAAGACGCGTCCAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA