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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttatttttgttcttgtcttgcaatttctatagcaattagcaaacaacatgataatgttggcctacccctaatgcattttcattgctttctttttgcctgcttaatgtgctgatctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTGACAGCATCAGTCGGCGATTTCCAGTGGAGCCAAAACTTTAGGGAATCAC

Basic information

species Zea mays
transcript GRMZM2G151580_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151580_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g10410.1 (Oryza sativa), 3'ss of exon 4
-gtaatttatttttgttcttgtcttgcaatttctatagcaatta-gcaaaca---acatgat---aatgttggcctacccctaatgcattttcattgctttctttttgcctgcttaatgtgctgatctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTGACAGCATCAGTCGGCGATTTCCAGTGGAGCCAAAACTTTAGGGAATCAC
  ||  ||  || |  | |   | ||  ||||  ||| |||  | ||   |    |||||||   | | ||     | || |   |  || | | ||  |  | |||  |    | |  || || | |||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| || || ||||
gttaggtttcttatcatttcaacctgtgattttcataacaagcatgccggcccgtacatgattttattattaaaagaaccatgtggttttctgagtggatcatgtttttcctactcacctgttggtgtcttctcagAAACAATTTTCAGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTGACAGCATCTGTAGGTGATTTCCAGTGGAGCCAAAACTTCAGAGAGTCAC

upper sequence: GRMZM2G151580_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA10G38820.1 (Glycine max), 3'ss of exon 4
gtaatttatttttgttcttgtcttgcaatttctatagcaattagcaaacaacatgataatgttggcctacccctaatgcattttcattgctttctttttgcctgcttaatgtgctgatctcttgt-cagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTGACAGCATCAGTCGGCGATTTCCAGTGGAGCCAAAACTTTAGGGAATCAC
                          ||  |  || | || |    ||| |  |  | |   |    |      ||||||     |      |  |  ||||||  | || |     |   |||| |||||||||||||| || |||||  |||| ||||| ||||| ||||| || |||||||||||||| |  ||||| |||||||| || || || | |||| | |
------------------------agaaaattgat-gtaaatgttgaactat-tattgagtgtaaattttaatcaatgcaag---acaagcattgtaatgcctgtgtcatatttctctaatttgtgcagAAACAATTCTCTGAACTACTGATGAAGGCAGCTAGTGATTATGGTGCTTTGACAGCATCAGTGGCAGATTTTCAGTGGAGTCAGAATTTCAAGGAACCTC

upper sequence: GRMZM2G151580_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA20G28950.2 (Glycine max), 3'ss of exon 5
gtaatttatttttgttcttgtcttgcaatttctatagcaattagcaaacaacatgataatgttggcctacccctaatgcattttcattgctttctttttgcctgcttaatgtgctgatctcttgt-cagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTGACAGCATCAGTCGGCGATTTCCAGTGGAGCCAAAACTTTAGGGAATCAC
                      ||| || ||     | || |    ||| |      | |||     ||  |  ||||||       ||| || |  | ||  |  | || |     |   |||| ||||| |||||||| || |||||  |||| ||||| ||||| ||||| || |||||||||||||| |  ||||| |||||||| || || || | |||| | |
----------------------ttgaaaatt--gatgtaaatgttgaactattattgagtgtaattttaatc--aatgcaagaca--tgcattgtaat-gctcgtgtcatatttctctaatttgtgcagAAGCAATTCTCTGAACTACTGATGAAGGCAGCTAGTGATTATGGTGCTTTGACAGCATCAGTGGCAGATTTTCAGTGGAGTCAGAATTTCAAGGAACCTC

upper sequence: GRMZM2G151580_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT2G32980.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaatttatttttgttcttgtcttgcaatttctatagcaattagcaaacaacatgataatgttggcctacccctaatgcattttcattgctttctttttgcctgcttaatgtgctgatct-cttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTGACAGCATCAGTCGGCGATTTCCAGTGGAGCCAAAACTTTAGGGAATCAC
        |  ||  |    | ||  | | | |  | |  | || |    |  |  ||    ||   |  | | | || |     |      | | |||    ||||  ||| ||| | |  || ||||||||||||||| ||| | ||  ||||||| || ||||| ||||| || || |||||||| ||    ||||| |||||||||||||||||||  ||| | |
-------gtgattcatgccattttatactatttgcaactttgaggaccttatttagtatc--tgaagttgcacaactggaaaacgaagatgctatgtttaatggctt--tgttctgctttgtttttcagAAACAATTCTCAGAGTTGCTAATGAAAGCCGCCAGTGATTATGGCGCCTTAACAGCATCCGTGTCTGATTTTCAGTGGAGCCAAAACTTTAAAGAACCTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8383242|gb|BE056185.1|BE056185
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|58029918|gb|CX725345.1|CX725345
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|211033211|gb|FK982752.1|FK982752
EST:     GCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCNTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: GCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGC-TGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|76934754|gb|DV174014.1|DV174014
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|86470304|gb|DY236674.1|DY236674
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|28910110|gb|CB331266.1|CB331266
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|101383901|gb|EB814005.1|EB814005
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|74245692|gb|DT653606.1|DT653606
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|113701683|gb|EE679187.1|EE679187
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|149079676|gb|EE168672.2|EE168672
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|148965294|gb|EE016099.2|EE016099
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|211033210|gb|FK982751.1|FK982751
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|101394443|gb|EB819156.1|EB819156
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|31350966|gb|CD435323.1|CD435323
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|78110456|gb|DV528866.1|DV528866
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTTTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|60341829|gb|DN208802.1|DN208802
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|28986849|gb|CB351340.1|CB351340
EST:     GACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: GACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|211033209|gb|FK982750.1|FK982750
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|31352195|gb|CD436552.1|CD436552
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|149059488|gb|EE156973.2|EE156973
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|78110457|gb|DV528867.1|DV528867
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|211134623|gb|FL369505.1|FL369505
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGG
EST: gi|74245691|gb|DT653605.1|DT653605
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|22545500|gb|BU097859.1|BU097859
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|211259909|gb|FL431082.1|FL431082
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|86467153|gb|DY233523.1|DY233523
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAA                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|101391367|gb|EB817618.1|EB817618
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|211032703|gb|FL419052.1|FL419052
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGG
EST: gi|22473167|gb|BU037647.1|BU037647
EST:     TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: TGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
EST: gi|18174900|gb|BM350288.1|BM350288
EST:     GCAACAGCATTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAG                         AAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG
genomic: GCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 122

GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTGACAGCATCAGTCGGCGATTTCCAGTGGAGCCAAAACTTTAGGGAATCAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 88

GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTGACAGCATCAGTCGGCGATTTCCAGTGGAGCCAAAACTTTAGGGAATCAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 89

GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTGACAGCATCAGTCGGCGATTTCCAGTGGAGCCAAAACTTTAGGGAATCAC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 99

GATCGTATTATTGCTCGGCTGCAACAGCCTTATTCCCTTGACTGCATACCAGTTGAAGCTGAATACCAGgtaatttatt ... ctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTGACAGCATCAGTCGGCGATTTCCAGTGGAGCCAAAACTTTAGGGAATCAC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgcattttcattgctttctttttgcctgcttaatgtgctgatctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTGACAGCATCAGTCGGCGATTTCCAGTGGAGCCAAAACTTTAGGGAATCAC
                                      tgctgat  putative branch site (score: 99)
                                            tctcttgtc  CT-rich tract
      attttcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatttatttttgttcttgtcttgcaatttctatagcaattagcaaacaacatgataatgttggcctacccctaatgcattttcattgctttctttttgcctgcttaatgtgctgatctcttgtcagAAACAATTCTCGGAGCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTGACAGCATCAGTCGGCGATTTCCAGTGGAGCCAAAACTTTAGGGAATCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG