1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgccatgacaaccatgatcctaacaatcagcaataataattgtgatatgatataaaacttgttaatgtacatcatcatgttgtaatgtctacttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTGTCAGTGTTCCTTTGAGAGATGAGTTCCTTGAAAATGCTAGGCTTTTTA
species | Zea mays |
transcript | GRMZM2G151549_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTEST: gi|211499749|gb|FL295237.1|FL295237
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTEST: gi|211496877|gb|FL295235.1|FL295235
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: TTAACTATGATTTTKATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GTTATACTCAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTEST: gi|67023707|gb|CO452456.1|CO452456
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTEST: gi|60354489|gb|DN221462.1|DN221462
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTEST: gi|71772603|gb|DR970531.1|DR970531
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTEST: gi|148929371|gb|EC875323.2|EC875323
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTEST: gi|5915274|gb|AW052915.1|AW052915
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: TATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTEST: gi|211221048|gb|FL468686.1|FL468686
genomic: TATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: GTGCTCAACAGAAACTCATAGAGTGTGAGCAG GTTATACTCAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTEST: gi|78113788|gb|DV532177.1|DV532177
genomic: GTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTEST: gi|61119784|gb|DN560745.1|DN560745
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: TCATAGAGTGTGAGCAG GTTATACTGAATGNATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTEST: gi|6020868|gb|AW065796.1|AW065796
genomic: TCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATG-ATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTT
EST: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTEST: gi|148988253|gb|EE031627.2|EE031627
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTEST: gi|6056588|gb|AW090993.1|AW090993
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: TTAACTATGATTNTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTEST: gi|6194537|gb|AW146641.1|AW146641
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTEST: gi|211499748|gb|FL295236.1|FL295236
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
tatgatataaaacttgttaatgtacatcatcatgttgtaatgtctacttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTGTCAGTGTTCCTTTGAGAGATGAGTTCCTTGAAAATGCTAGGCTTTTTA
tgttaat putative branch site (score: 3)
tctacttttct putative PPT
tataaaacttgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccatgacaaccatgatcctaacaatcagcaataataattgtgatatgatataaaacttgttaatgtacatcatcatgttgtaatgtctacttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTTGTCAGTGTTCCTTTGAGAGATGAGTTCCTTGAAAATGCTAGGCTTTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
-gccatga
- - - - - - catgatc
- - - - - - - - - - - - -atcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgta