1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttttatattattaacctccaaatacagtcagtatgctctagtttaagttttggttttctacagcatgctgtggtcatttaatcatattgttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCTGATCCATCACTAAATGCTGAACATCGGAGCATGAGGAGGGCACCATCAG
species | Zea mays |
transcript | GRMZM2G151268_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGGAGCAGGAGTGCTGAAAGTGGTCCACTGCTTTTAGATGTTCTCGAAG AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCTEST: gi|74239382|gb|DT647296.1|DT647296
genomic: AGGGAGCAGGAGTGCTGAAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGgttatctgaa ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: AGGGAGCAGGAGTGCTGAAAGTGGTCCACTGCTTTTAGATGTTCTCGAAG AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AGGGAGCAGGAGTGCTGAAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGgttatctgaa ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
aagttttggttttctacagcatgctgtggtcatttaatcatattgttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCTGATCCATCACTAAATGCTGAACATCGGAGCATGAGGAGGGCACCATCAG
atttaat putative branch site (score: 11)
ttgtttt putative PPT
atttaatcatattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttatattattaacctccaaatacagtcagtatgctctagtttaagttttggttttctacagcatgctgtggtcatttaatcatattgttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCTGATCCATCACTAAATGCTGAACATCGGAGCATGAGGAGGGCACCATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - acctcca
- - - - - - - - - - - - - - - -gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcatgc