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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattgatctttgcatttcattattaggatcgacaaccagttcattctctctgtgccttatctgtacagttaaagcttcatgttttgtactctgttataacagggttaacttgaacctgtgtgtgatattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGA

Basic information

species Zea mays
transcript GRMZM2G150867_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os10g31000.1 (Oryza sativa), 3'ss of exon 4
gtaagattgatctttgcatttcattattaggatcgacaaccagttcattctctctgtgccttatctgtacagttaaagcttcatgttttgtactct-gttataacagggttaacttgaacctgtgtgtga-tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGA
                                          ||    |  ||||   |||| ||  ||    ||  | | | || | | || ||| | |   | |    |   |||||  | |   ||| | ||| |||||||| |||||||||||||| |||||||||||||||||||| || || || ||||||||||| |||||||||||||| || |||||  |||||||||||||
------------------------------------------gtgagataactctcgtccttgtcattattagtacgggtacttgctgtttattctagcttctataaccctgggttgaatatttccatgaatttttggcagATCTAGTTAATGTGTTCGAAGTCTTCCTTCCACAACTTCTATTGTACCCAAATCCTTCTGACCCATTAAATGGAGAGGCTGCTGCACTGATGATGCGTGA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA09G39370.1 (Glycine max), 3'ss of exon 3
gtaagattgatctttgcatttcattattaggatcgacaaccagttcattctctctgtgccttatctgtacagtta-aagcttcatgttttgtactctgttataacagggttaacttgaacct--gtgtgtgatattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGA
                             | |  || |  || |  ||| |    |  | ||    ||   |||  ||| || || ||||| ||    || |    || | |  ||  |  |     | |  | | || ||||||||||||||||||| ||||| || || || ||||||||| | ||||| ||||| || || || || |||||||| || || || || |||||||||||
-----------------------------gtaatgaaattcattaaatttttatagaacatttgtggttttgttctaagttttatattttg-acatatttgtttttggttcattttatatgtcaaaatctattttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCCGCTTTAATGATGCGTGA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA18G46940.1 (Glycine max), 3'ss of exon 4
gtaagattgatctttgcatttcattattaggatcgacaaccagttcattctctctgtgccttatctgtacagttaaagcttcatgttttgtactctgttataacagggttaacttgaa--cctgtgtgtgatattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGA-
                               |  || |  ||  | |   | |||| |    || |||    ||   | |  ||||||| || | ||  ||    |  ||   |   |  ||    | |  | | || ||||||||||||||||||| ||||| || || || ||||||||| | ||||| ||||| || || || || |||||||| || || || || ||||||||||| 
------------------------------taatgaaattca--ttaaattttctgaggaacatttgtggtttt---gttcaatgttttatattttgacatttttgttttggttcatatgccaaaatctactttgttccagaTCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGAT

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA05G37650.1 (Glycine max), 3'ss of exon 4
gtaagattgatctttgcatttcattattaggatcgacaaccagttcattctctctgtgccttatctgtacagttaaagcttcatgttttgtactctgttataacagggttaacttgaacctgtgtgtgatattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGA
              |      |||| |||  |     |     | ||| ||  |  ||| ||   | ||   ||   ||||  |   |   |||   | | ||   ||| |  || |   |   | |  | | || |||| |||||||||||||| ||||| || ||||| ||||||||  | || || ||| | || |||||||| ||||| ||||| ||||| |||||||| || ||
-------------gtaagcaacatt-ttaaaaaatttattggatgcatacttgccatgcatttgatttagcctt---gctttgttactgccactacttaaaaatttggtaa--ttcagttttcttat--tttctttcagACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTGAATGGTGATGCTGCTGCCTTGATGATTCGAGA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA08G01940.3 (Glycine max), 3'ss of exon 4
gtaagattgatctttgcatttcattattaggatcgacaaccagttcattctctctgtgccttatctgtacagttaaagcttcatgttttgta--ctctgttataacagggttaacttgaacctgtgtgtgatattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGA
              |      || ||||   |  ||     | | ||| |   || |||| ||||  |    || || |||  | | ||     | ||  |  ||    ||||| |      | ||     |   || |||| |||||||||||||| ||||| || ||||| ||||||||  | || || ||| | || |||||||||||||| ||||| ||||| |||||||| || ||
-------------gtaagcagcaatatttaaa--gaattttattacatgcatact-tgccatatccatttgattcaaccttgctttgttactgccactacttaaaatttgttaattcagttttctg---atttcctttcagACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTAAATGGTGATGCTGCTGCCTTGATGATTCGAGA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT5G41340.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagattgatctttgcatttcattattaggatcgacaaccagttcattctctctgtgccttatctgtacagttaaagcttcatgttttgtactctgttataacagggttaacttgaacctgtgtgtgatattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGA
                           || |  ||| | | | |    | | | |          || | | ||        ||| ||  |  | || | ||||    |    |||   ||   |      |||| |||| ||||| |||||||| |||   || ||||| || |||||  | ||||| || || || |||||||| |||||||| || |||||||| |||||||||||
--------------------------gtaagggcgatatcaaatgtggtttattt----------tgaatatttgggatcaaatgattgctgttgtgatttaactttatgtttttggttcttctt------tttttcagACCTTGTGAATGTGTTTGAGACATTTCTTCCTCAGCTTCTTCTGTATCCAAACCCATCAGATCCATTGAATGGAGAAGCTGCTGCGTTAATGATGCGTGA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT1G63800.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagattgatctttgcatttcattattaggatcgacaaccagttcattctctctgtgccttatctgtacagttaaagcttcatgttttgtactctgttataacagggttaacttgaacctgtgtgtgatattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGA
                                          | ||||      || |    || |  |   |   || || |  |  |||    | || | |    ||||| |   |  ||  | |  |  ||  |||| || || ||||||||||||   || ||||| ||||||||  | ||||| ||||| || |||||||| ||||| || |||||||| ||||||||||||||
--------------------------------------gtatgatcataacaaatg-gaacaatatacaagat---agttttaactcctgttagtttttgttat---gttaattatgatttggatttagttatt--cagACCTGGTGAATGTGTTCGAGACATTTCTTCCGCAACTTCTTCTGTATCCGAATCCGTCAGATCCATTGAATGGTGAAGCAGCTGCATTGATGATGCGTGA

upper sequence: GRMZM2G150867_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv15s0046g02280.t01 (Vitis vinifera), 3'ss of exon 4
gtaa-gattgatctttgcatttcattattaggatcgacaaccagttcattctctctgtgccttatctgtacagttaaagcttcatgtt--ttgtactctgttataacagggttaacttgaacctgtgtgtgatattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGA
|||| |||| |      |||||     |   | |||| ||  ||  | | | |   ||  ||     | | |   |||||| | | ||  || || |   ||     |  |||| | |           || | |||| ||||||| || || ||||| ||||| |||||||| |||||||| || ||||| || || || ||||||||||||||||| || || ||  | |||||||||||
gtaatgattaacaaactcatttggcattcttgttcgataaataggacttccgcatcgtttctctggagaaaaaacaaagctactttttagttttaatggtttgagctactgttatcgtatgttgacacctg-tgttttccagATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCAACCCATCAGATCCATTAAATGGAGAGGCTGCAGCTCTAATGATGCGTGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6056913|gb|AW091318.1|AW091318
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTCAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|211541025|gb|FL000900.1|FL000900
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTCAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|26559982|gb|CA832217.1|CA832217
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGGTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|15499388|gb|BI595901.1|BI595901
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTCAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|211541022|gb|FL000897.1|FL000897
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGGTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|87157692|gb|DY402481.1|DY402481
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|33103947|gb|CF063907.1|CF063907
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTCAATGTGTTCGAGGCCTTCCTTCCACAACTTTTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|12971358|gb|BG267442.1|BG267442
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|28984207|gb|BQ538996.2|BQ538996
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|23199807|gb|BU582372.1|BU582372
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|211541028|gb|FL000903.1|FL000903
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCC-AATGTTTG                         ATCTTGTCAATGTGTTCG
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCG
EST: gi|15427006|gb|BI542828.1|BI542828
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTCAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|5439433|gb|AI820354.1|AI820354
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|211541018|gb|FL000893.1|FL000893
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|84980137|gb|DW530486.1|DW530486
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTCAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|37394410|gb|CF634479.1|CF634479
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|5455873|gb|AI833563.1|AI833563
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|5525634|gb|AI861527.1|AI861527
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTCAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|32911041|gb|CF015853.1|CF015853
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTCAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
EST: gi|211096443|gb|FL454804.1|FL454804
EST:     TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTG                         ATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA
genomic: TGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 343

GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 404

GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 289

GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 338

GTCTGGTTCAGTCTGTTTGGATGTCATCAACCAGACATGGAGCCCAATGTTTGgtaagattga ... tattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttgtactctgttataacagggttaacttgaacctgtgtgtgatattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGA
                                          tgatatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagattgatctttgcatttcattattaggatcgacaaccagttcattctctctgtgccttatctgtacagttaaagcttcatgttttgtactctgttataacagggttaacttgaacctgtgtgtgatattttgcagATCTTGTTAATGTGTTCGAGGTCTTCCTTCCACAACTTCTGTTATATCCTAATCCTTCTGATCCATTAAATGGAGATGCAGCTGCGTTGATGATGCGTGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC