1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttcattttttttttcttgtaacagctttttcagacatgttaagctgtttagttgctctacttatgagtaccgttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGATAATCTCATTGTCTGGCGTGCTCCACTTTTCCACT
species | Zea mays |
transcript | GRMZM2G150251_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC---- TGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGAEST: gi|60349110|gb|DN216083.1|DN216083
genomic: CTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCGTAGgttcattttt ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: CTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC-T-G --CAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGAEST: gi|76020573|gb|DT947743.1|DT947743
genomic: CTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCGTAGgttcattttt ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: CTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC-T-G --CAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGAEST: gi|32837706|gb|CD977384.1|CD977384
genomic: CTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCGTAGgttcattttt ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: TGTGCTCACTGCCTACTTTTTCATTCTAGGCA-TGNTTGCTCTCTCGTAG TGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGAEST: gi|76282341|gb|DV021909.1|DV021909
genomic: TGTGCTCACTGCCTACTTTTTCATTCTAGGCATTG-TTGCTCTCTCGTAGgttcattttt ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: CTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC-T-G --CAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGAEST: gi|211138912|gb|FK978960.1|FK978960
genomic: CTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCGTAGgttcattttt ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: CTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC-T-G --CAACACTGCTTCCTTCTATAAAACEST: gi|30031840|gb|CB833691.1|CB833691
genomic: CTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCGTAGgttcattttt ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAAC
EST: CTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC-T-G --CAACACTGCTTCCTTCTATAAAEST: gi|93282675|gb|EB674939.1|EB674939
genomic: CTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCGTAGgttcattttt ... ttttatgcagTGCAACACTGCTTCCTTCTATAAA
EST: CTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC-T-G --CAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: CTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCGTAGgttcattttt ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
tttcagacatgttaagctgtttagttgctctacttatgagtaccgttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGATAATCTCATTGTCTGGCGTGCTCCACTTTTCCACT
ccgtttt CT-rich tract
ttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcattttttttttcttgtaacagctttttcagacatgttaagctgtttagttgctctacttatgagtaccgttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGATAATCTCATTGTCTGGCGTGCTCCACTTTTCCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA