1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaggttcattttttttttcttgtaacagctttttcagacatgttaagctgtttagttgctctacttatgagtaccgttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGATAATCTCATTGTCTGGCGTGCTCCACTTTTCCACT
species | Zea mays |
transcript | GRMZM2G150251_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC TGCAACACTGCTTCCTTCTATAAAACEST: gi|78123105|gb|DV541489.1|DV541489
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAAC
EST: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC TGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGAAATGAEST: gi|93282675|gb|EB674939.1|EB674939
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC TGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGAEST: gi|60353103|gb|DN220076.1|DN220076
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC TGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGAEST: gi|32837706|gb|CD977384.1|CD977384
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCA-TGNTTGCTCTCTC GEST: gi|32837706|gb|CD977384.1|CD977384
genomic: GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTG-TTGCTCTCTCgtaggttcat ... ttttatgcag-
EST: GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCA-TGNTTGCTCTCTC GEST: gi|32837706|gb|CD977384.1|CD977384
genomic: GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTG-TTGCTCTCTCgtaggttcat ... ttttatgcag-
EST: GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCA-TGNTTGCTCTCTC GEST: gi|32837706|gb|CD977384.1|CD977384
genomic: GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTG-TTGCTCTCTCgtaggttcat ... ttttatgcag-
EST: GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCA-TGNTTGCTCTCTC GEST: gi|32837706|gb|CD977384.1|CD977384
genomic: GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTG-TTGCTCTCTCgtaggttcat ... ttttatgcag-
EST: GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCA-TGNTTGCTCTCTC GEST: gi|76020573|gb|DT947743.1|DT947743
genomic: GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTG-TTGCTCTCTCgtaggttcat ... ttttatgcag-
EST: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC TGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGAEST: gi|30031840|gb|CB833691.1|CB833691
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC TGCAACACTGCTTCCTTCTATAAAEST: gi|60349110|gb|DN216083.1|DN216083
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAA
EST: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC TGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGAEST: gi|76282341|gb|DV021909.1|DV021909
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC TGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
tttcagacatgttaagctgtttagttgctctacttatgagtaccgttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGATAATCTCATTGTCTGGCGTGCTCCACTTTTCCACT
ccgtttt CT-rich tract
ttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttcattttttttttcttgtaacagctttttcagacatgttaagctgtttagttgctctacttatgagtaccgttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGATAATCTCATTGTCTGGCGTGCTCCACTTTTCCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA