1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctgatctggagcacttataatgcttatatttgttagttccttttgttcagcatataagtagttttttgctaactaacacctacttgaataacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGATTACATTGAAGTTTCAATTGGACAACAAAGGGTTCGGCTCTACATCATAA
species | Zea mays |
transcript | GRMZM2G150209_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGAGGAAGACCACACATGTGCTGTTAGAGAA GTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGATEST: gi|71763175|gb|DR961112.1|DR961112
genomic: ATGAGGAAGACCACACATGTGCTGTTAGAGAAgtaaacttct ... aacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGAT
EST: GTGGAAAGAGGAATAAAGATGAGGAAGACCACACATGTGCTGTTAGAGAA GTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGATEST: gi|67023920|gb|CO452669.1|CO452669
genomic: GTGGAAAGAGGAATAAAGATGAGGAAGACCACACATGTGCTGTTAGAGAAgtaaacttct ... aacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGAT
EST: GTGGAAAGAGGAATAAAGATGAGGAAGACCACACATGTGCTGTTAGAGAA GTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGATEST: gi|87156906|gb|DY401695.1|DY401695
genomic: GTGGAAAGAGGAATAAAGATGAGGAAGACCACACATGTGCTGTTAGAGAAgtaaacttct ... aacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGAT
EST: ATGAGGAAGA-CACACATGTGCTGTTAGAGAA GTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGATEST: gi|78087169|gb|DV515562.1|DV515562
genomic: ATGAGGAAGACCACACATGTGCTGTTAGAGAAgtaaacttct ... aacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGAT
EST: GTGGAAAGAGGAATAAAGATGAGGAAGACCACACATGTGCTGTTAGAGAA GTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGATEST: gi|78104490|gb|DV522908.1|DV522908
genomic: GTGGAAAGAGGAATAAAGATGAGGAAGACCACACATGTGCTGTTAGAGAAgtaaacttct ... aacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGAT
EST: GTGGAAAGAGGAATAAAGATGAGGAAGACCACACATGTGCTGTTAGAGAA GTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGATEST: gi|78122727|gb|DV541111.1|DV541111
genomic: GTGGAAAGAGGAATAAAGATGAGGAAGACCACACATGTGCTGTTAGAGAAgtaaacttct ... aacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGAT
EST: ATGTGCTGTTAGAGAA GTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGATEST: gi|5268613|gb|AI770577.1|AI770577
genomic: ATGTGCTGTTAGAGAAgtaaacttct ... aacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGAT
EST: GTGGAAAGAGGAATAAAGATGAGGAAGACCACACATGTGCTGTTAGAGAA GTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGAT
genomic: GTGGAAAGAGGAATAAAGATGAGGAAGACCACACATGTGCTGTTAGAGAAgtaaacttct ... aacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGAT
gttcagcatataagtagttttttgctaactaacacctacttgaataacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGATTACATTGAAGTTTCAATTGGACAACAAAGGGTTCGGCTCTACATCATAA
atataagtagtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgatctggagcacttataatgcttatatttgttagttccttttgttcagcatataagtagttttttgctaactaacacctacttgaataacaatgcagGTTCTAGAGGAAACTGGGTGTGATGTTTCTAGACTATTAAATCTGGATGATTACATTGAAGTTTCAATTGGACAACAAAGGGTTCGGCTCTACATCATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG