1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcgtcgcctaggcgacaccttaaaaacactgtgacaaacagttttgtagttttggtaatcttaaaacaacagtacatcttatgaagctttcctaattcagCATGTTGGCCACTGTGATGAATGCTATATTTCTTCAAGCAACAATGGAGAGCATCGGAATACCGACCCGTGTCCAAACTGCCTTCCGTATGTCAGAAGTT
species | Zea mays |
transcript | GRMZM2G149535_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTTGGGCTGGATGTAGTGGTCTTGACCGCTCATCTGCAGATTACATCGG CATGTTGGCCACTGTGATGAATGCTATATTTCTTCAAGCAACAATGGAGAGEST: gi|71312662|gb|DR792853.1|DR792853
genomic: TCTTGGGCTGGATGTAGTGGTCTTGACCGCTCATCTGCAGATTACATCGGgtaagatgtt ... cctaattcagCATGTTGGCCACTGTGATGAATGCTATATTTCTTCAAGCAACAATGGAGAG
EST: TCTTGGGCTGGATGTAGTGGTCTTGACCGCTCATCTGCAGATTACATCGG CATGTTGGCCACTGTGATGAATGCTATATTTCTTCAAGCAACAATGGAGAGEST: gi|149000676|gb|EE037886.2|EE037886
genomic: TCTTGGGCTGGATGTAGTGGTCTTGACCGCTCATCTGCAGATTACATCGGgtaagatgtt ... cctaattcagCATGTTGGCCACTGTGATGAATGCTATATTTCTTCAAGCAACAATGGAGAG
EST: TCTTGGGCTGGATGTAGTGGTCTTGACCGCTCATCTGCAGATTACATCGG CATGTTGGCCCACTGTGATGAATGCTATATTTCTTCAAGCAACAATGGAGA
genomic: TCTTGGGCTGGATGTAGTGGTCTTGACCGCTCATCTGCAGATTACATCGGgtaagatgtt ... cctaattcagCATGTTGGCC-ACTGTGATGAATGCTATATTTCTTCAAGCAACAATGGAGA
gtagttttggtaatcttaaaacaacagtacatcttatgaagctttcctaattcagCATGTTGGCCACTGTGATGAATGCTATATTTCTTCAAGCAACAATGGAGAGCATCGGAATACCGACCCGTGTCCAAACTGCCTTCCGTATGTCAGAAGTT
tcctaat putative branch site (score: 4)
ctttcct CT-rich tract
taatcttaaaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgtcgcctaggcgacaccttaaaaacactgtgacaaacagttttgtagttttggtaatcttaaaacaacagtacatcttatgaagctttcctaattcagCATGTTGGCCACTGTGATGAATGCTATATTTCTTCAAGCAACAATGGAGAGCATCGGAATACCGACCCGTGTCCAAACTGCCTTCCGTATGTCAGAAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - -aaaaaca
- - - - - - - - - - - - - - - - -acaaaca
- - - - - - - - - - - - - - - - - - - - - - - - -ttttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaagct