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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgagagcctagctacaaaatacaacttttctcctcttgtttttgtgcctacacgcaatttaataaattttattacaggttccgaattgcttacgtaccctttgtttggacaattccttggtttcagGTGCTCGCGTCTCTGTGGCTGTACAGGCAGATCCTTGATGCCATTGAGGCAAACGACTACAACAACTTCACCAAGCGTGCGTACGTCGGCAAGGCCAAGA

Basic information

species Zea mays
transcript GRMZM2G149317_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149317_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os12g43130.1 (Oryza sativa), 3'ss of exon 5
gtatgtgagagcctagctacaaaatacaacttttctcctcttgtttttgtgcctacacgcaatttaataaattt-tattacaggttccgaattgcttacgtaccctttgtttggacaattccttggtttcagGTGCTCGCGTCTCTGTGGCTGTACAGGCAGATCCTTGATGCCATTGAGGCAAACGACTACAACAACTTCACCAAGCGTGCGTACGTCGGCAAGGCCAAGA
                                          || |  | | |||||   ||||       ||| | || ||       |||     ||  |   ||   ||   | |||  ||  |   |||| || || ||| ||||| | ||| |||||||||||||||| || || ||||||||||||||||||||||||||||| ||||| ||   |||||| ||||
------------------------------------------gtatgagaggctaca---aattctgcggttttatgttccacaaataaaataaaccactgaaatttaccttaatcgattattttctcgtagGTTCTGGCATCTTTGTGGTTATACCGGCAGATCCTTGATGCTATCGAAGCAAACGACTACAACAACTTCACCAAGCGCGCGTATGTAAACAAGGCAAAGA

upper sequence: GRMZM2G149317_T03 (Zea mays), 3'ss of exon 4
lower sequence: EDO97702 (Chlamydomonas reinhardtii), 3'ss of exon 4
gtatgtgagagcctagctacaaaatacaacttttctcctcttgtttttgtgcctacacgcaatttaataaattttattacaggttccgaattgcttacgtaccctttgt-ttggacaattccttggtttcagGTGCTCGCGTCTCTGTGGCTGTACAGGCAGATCCTTGATGCCATTGAGGCAAACGACTACAACAACTTCACCAAGCGTGCGTACGTCGGCAAG--GC-CAAGA--
                                  |||  |  | |     ||     |   |  |   | |    ||  | |   ||  ||  |   |   ||| |     | | ||    |||     |||||     || | |||   |||||| | |||||||| || ||||||||||| ||||||||| |||||||| ||||||| || |||||   ||||  || |||||  
--------------------------------ggctctccaggctcagccgcgccaccatgacctgcaacaccgcatagctgacccctgatcccccccccccccgtcacacttggcaccctcttccccccagGT-----CGGCGCTGATCCTGTACCGCCAGATCCTGGACGCCATTGAGGCGAACGACTACGACAACTTCTCCAAGCGCGCCTACGTGCCCAAGTGGCGCAAGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacaggttccgaattgcttacgtaccctttgtttggacaattccttggtttcagGTGCTCGCGTCTCTGTGGCTGTACAGGCAGATCCTTGATGCCATTGAGGCAAACGACTACAACAACTTCACCAAGCGTGCGTACGTCGGCAAGGCCAAGA
               tgcttac  putative branch site (score: 2)
                                         ttcctt  putative PPT
                            tttgttt  TA-rich tract