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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgccatatggcttgctaccattttattaagttggatctagtttactgagagacttctgaattttctaacacttgtctttatttccagTATGCTCGTATTATTCAGAAACTTGGTTTTCCAGCTAAATTCAAG

Basic information

species Zea mays
transcript GRMZM2G149238_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149238_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 3'ss of exon 5
gtgccatatggcttgctaccattttattaagttggatctagtttactgagagacttctgaattttctaacacttgtctttatttccagTATGCTCGTATTATTCAGAAACTTGGTTTTCCAGCTAAATTCAAG
  |    |  | | | |   ||||||||  | |  ||||   |  ||||              |  ||||||| || |||||  |||||| ||||||||||| ||||| ||||| ||||| ||||||||||||
--gtatgagcggtagtttttattttattttgctatatctgtctctctgaag------------tcttaacactagtttttatcaccagTACGCTCGTATTATCCAGAAGCTTGGCTTTCCTGCTAAATTCAAG

upper sequence: GRMZM2G149238_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 3'ss of exon 5
----------------------------------------------------------------------------------------gtgccata-tggcttg-ctaccattttattaagttggatc----tagtttactgagagacttctgaattttctaacacttgtctt---tatttccagTATGCTCGTATTATTCAGAAACTTGGTTTTCCAGCTAAATTCAAG
                                                                                         | |   | | ||  | | |  || | | ||||||  |||    ||    |   |   | |||| |  || |      || | ||   | ||||||||||||||| ||||||||||| || ||||||||||||||||| |||
gtatttgatgcattcagtgtgtttagttatcttaaaagttgtaggtgtaattttatctatcaaatttaaaacaagttgtaagtgtaatttactggaatagcaaggcaatgatgtaaataagttccatcatcttatcacaacaatgtatttctaatcttacatgttttttttttgtttttttccagTATGCTCGAATTATTCAGAAGCTCGGTTTTCCAGCTAAATTTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatctagtttactgagagacttctgaattttctaacacttgtctttatttccagTATGCTCGTATTATTCAGAAACTTGGTTTTCCAGCTAAATTCAAG
                              ttctaac  putative branch site (score: 1)
                                      cttgtctttatttcc  CT-rich tract
                          aattttctaa  TA-rich tract