1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtctgcttctcgatagaaccaccagccaaccgcatattggcagtgtccccaccgatgatgagtcgtgagtcctgacaaaatttgacgcgagtctgtttttttcagATGCCTTGAGGAAGGCGCGGAGGACTTCCTGCTGAAGCCGGTCAGGCCGTCCGACATCTCCCGCATAACAACCAGGATGCTGCTACACTGAACTTCTTTC
species | Zea mays |
transcript | GRMZM2G148056_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCCCAGTGGTGATCATGTCCTCAGAGAACGTGCCCACCAGAATCACCAG ATGCCTTGAGGGAAGGCGCGGAGGACTTCCTGCTGAAGCCGGTCAGGCCGTEST: gi|148935412|gb|EC879456.2|EC879456
genomic: ATCCCAGTGGTGATCATGTCCTCAGAGAACGTGCCCACCAGAATCACCAGgtctgcttct ... tttttttcagATGCCTTGAGG-AAGGCGCGGAGGACTTCCTGCTGAAGCCGGTCAGGCCGT
EST: ATCCCAGTGGTGATCATGTCCTCAGAGAACGTGCCCACCAGAATCACCAG ATGCCTTGAGGAAGGCGCGGAGGACTTCCTGCTGAAGCCGGTCAGGCCGTCEST: gi|211326337|gb|FK968442.1|FK968442
genomic: ATCCCAGTGGTGATCATGTCCTCAGAGAACGTGCCCACCAGAATCACCAGgtctgcttct ... tttttttcagATGCCTTGAGGAAGGCGCGGAGGACTTCCTGCTGAAGCCGGTCAGGCCGTC
EST: CCAGAATCACCAG ATGCCTTGAGGAACGTTGCGGAGGACTTCCTGCTGAAGCCGGTCAGGCCGTEST: gi|211386621|gb|FL467990.1|FL467990
genomic: CCAGAATCACCAGgtctgcttct ... tttttttcagATGCCTTGAGGAA-GGCGCGGAGGACTTCCTGCTGAAGCCGGTCAGGCCGT
EST: ATCCCAGTGGTGATCATGTCCTCAGAGAACGTGCCCACCAGAATCACCAG ATGCYTTGAGGAAGGCGCGGAGGACTTCCTGCTGAAGCCGGTCAGGCCGTCEST: gi|148961641|gb|EE012410.2|EE012410
genomic: ATCCCAGTGGTGATCATGTCCTCAGAGAACGTGCCCACCAGAATCACCAGgtctgcttct ... tttttttcagATGCCTTGAGGAAGGCGCGGAGGACTTCCTGCTGAAGCCGGTCAGGCCGTC
EST: ATCCCAGTGGTGATCATGTCCTCAGAGAACGTGCCCACCAGAATCACCAG ATGCCTTGAGGAAGGCGCGGAGGACTTCCTGCTGAAGCCGGTCAGGCCGTC
genomic: ATCCCAGTGGTGATCATGTCCTCAGAGAACGTGCCCACCAGAATCACCAGgtctgcttct ... tttttttcagATGCCTTGAGGAAGGCGCGGAGGACTTCCTGCTGAAGCCGGTCAGGCCGTC
accgatgatgagtcgtgagtcctgacaaaatttgacgcgagtctgtttttttcagATGCCTTGAGGAAGGCGCGGAGGACTTCCTGCTGAAGCCGGTCAGGCCGTCCGACATCTCCCGCATAACAACCAGGATGCTGCTACACTGAACTTCTTTC
tctgtttttttc CT-rich tract
acaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgcttctcgatagaaccaccagccaaccgcatattggcagtgtccccaccgatgatgagtcgtgagtcctgacaaaatttgacgcgagtctgtttttttcagATGCCTTGAGGAAGGCGCGGAGGACTTCCTGCTGAAGCCGGTCAGGCCGTCCGACATCTCCCGCATAACAACCAGGATGCTGCTACACTGAACTTCTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT