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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatctgctcatatctagacaactgaagtatggtaacgaagtttacagtttcttgggccagagcttttgctgttctgatctgtattctataaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGACGTGGACTTCTTCGATAGACCTGAAATGCTTGGCGAGTCCATAGCCACG

Basic information

species Zea mays
transcript GRMZM2G147882_T04
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147882_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g09300.3 (Oryza sativa), 3'ss of exon 4
--aaatctgctcatatctagacaactgaagtatggtaacgaagtttacagtttcttgggccagagcttttgctgttctgatctgtattctataaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGACGTGGACTTCTTCGATAGACCTGAAATGCTTGGCGAGTCCATAGCCACG
  |    | |||  | |  |||   || || | | |   |   |   |  ||| |  |         | |  || | |||| || ||||||   | || |||||  || ||||||||| | |||||||| || || ||||||||| | ||||| | ||||||||| |||| ||| ||||||||||||||| |||||||||| 
ctagccgttctctaaacctgact-ttgcagcaagttttggtgatgctctttttgtatgatttattactgtaatgatttgatttgcattctaatgaatt-cagGAGGGTGGCAAAATCAATTGCAAGGATTATTGCCCTTGCTCTAAACCTAGAAGAGGACTTCTTTGATAAACCAGAAATGCTTGGCGAGCCCATAGCCACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32925957|gb|CF030769.1|CF030769
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926415|gb|CF031227.1|CF031227
EST:     TGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: TGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926466|gb|CF031278.1|CF031278
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926635|gb|CF031447.1|CF031447
EST:     GTATTACCANAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|71437198|gb|DR818248.1|DR818248
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926430|gb|CF031242.1|CF031242
EST:     TGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: TGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926417|gb|CF031229.1|CF031229
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGTAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32925395|gb|CF030207.1|CF030207
EST:     AGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: AGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|76287315|gb|DV026883.1|DV026883
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|71299023|gb|DR785502.1|DR785502
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926166|gb|CF030978.1|CF030978
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|88756286|gb|DY540427.1|DY540427
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCT
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCT
EST: gi|32926025|gb|CF030837.1|CF030837
EST:     CAAACATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: CAAA-ATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32925152|gb|CF029964.1|CF029964
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|78117759|gb|DV536146.1|DV536146
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926219|gb|CF031031.1|CF031031
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|78078283|gb|DV506698.1|DV506698
EST:     AGGGAGGCATT                         GATAGTTGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: AGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926072|gb|CF030884.1|CF030884
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|50323931|gb|CO519057.1|CO519057
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926162|gb|CF030974.1|CF030974
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926197|gb|CF031009.1|CF031009
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|71429426|gb|DR810476.1|DR810476
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|78078284|gb|DV506699.1|DV506699
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32925587|gb|CF030399.1|CF030399
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32925272|gb|CF030084.1|CF030084
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32925426|gb|CF030238.1|CF030238
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCACTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32925266|gb|CF030078.1|CF030078
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtttcttgggccagagcttttgctgttctgatctgtattctataaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGACGTGGACTTCTTCGATAGACCTGAAATGCTTGGCGAGTCCATAGCCACG
                           ttctgat  putative branch site (score: 3)
                                                ttttc  putative PPT
                                   tgtattctataaattt  TA-rich tract