1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgttacttgtaccctgtaggttgtagctttgctgtactgtaccgtgttttttttggcattttatctgacatgttagttgttttcatgcaggatcttccagGTGCACTCGATGATGCTGCCATTACAGAGTCATTAGAACTACACAAAATTAAGAGCCGCCAATGGGCGATTTTCAAAACATCTGCAATAAAGGGAGAGGG
species | Zea mays |
transcript | GRMZM2G147726_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGGATGAACTTAAAGGTGCAGTTGTCCTTGTGTATGCAAATAAGCAGGATCTTCCAGEST: gi|71775316|gb|DR973194.1|DR973194
genomic: GAGGATGAACTTAAAGGTGCAGTTGTCCTTGTGTATGCAAAT-A--A-G------CAGgtaaaaagaa ... g
EST: GAGGATGAACTTAAAGGTGCAGTTGTCCTTGTGTATGCAAATAAGCAGGATCTTCCAGEST: gi|211217104|gb|FL383487.1|FL383487
genomic: GAGGATGAACTTAAAGGTGCAGTTGTCCTTGTGTATGCAAAT-A--A-G------CAGgtaaaaagaa ... g
EST: GAGGATGAACTTAAAGGTGCAGTTGTCCTTGTGTATGCAAATAAGCAG GTGCACTCGATGATGCTGCCATTACAGAGTCATTAGAACTACACAAAATTAEST: gi|33092385|gb|CF052379.1|CF052379
genomic: GAGGATGAACTTAAAGGTGCAGTTGTCCTTGTGTATGCAAATAAGCAGgtaaaaagaa ... gatcttccagGTGCACTCGATGATGCTGCCATTACAGAGTCATTAGAACTACACAAAATTA
EST: GAGGATGAACTTAAAGGTGCAGTTGTCCTTGTGTATGCAAATAAGCAGGATCTTCCAG
genomic: GAGGATGAACTTAAAGGTGCAGTTGTCCTTGTGTATGCAAAT-A--A-G------CAGgtaaaaagaa ... g
gttttttttggcattttatctgacatgttagttgttttcatgcaggatcttccagGTGCACTCGATGATGCTGCCATTACAGAGTCATTAGAACTACACAAAATTAAGAGCCGCCAATGGGCGATTTTCAAAACATCTGCAATAAAGGGAGAGGG
atctgac putative branch site (score: 3)
tcttcc putative PPT
attttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttacttgtaccctgtaggttgtagctttgctgtactgtaccgtgttttttttggcattttatctgacatgttagttgttttcatgcaggatcttccagGTGCACTCGATGATGCTGCCATTACAGAGTCATTAGAACTACACAAAATTAAGAGCCGCCAATGGGCGATTTTCAAAACATCTGCAATAAAGGGAGAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
tgttact
- - - - - -ccctgta
- - - - - - - - - - - - - -tttgctg
- - - - - - - - - - - - - - - - - - ctgtacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatgc