1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...agtagatacattaatgcaattgactgcatcgtttcgagaatttaccaatgctgcttgtgattgactaatggctgcttgattaatgttatgccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGCTCAATTAGCAGCGAAAGATCGAGAGCTAGCCACTCTTACTCGAACG
species | Zea mays |
transcript | GRMZM2G147500_T05 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGCEST: gi|211122097|gb|FL004251.1|FL004251
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|33094171|gb|CF054165.1|CF054165
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAAAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGCEST: gi|211122868|gb|FL004257.1|FL004257
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|211122100|gb|FL004254.1|FL004254
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: GACAGAGGGACATTTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|33102758|gb|CF062718.1|CF062718
genomic: GACAGAGGGACATT-GAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAAAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGCEST: gi|76923168|gb|DV169366.1|DV169366
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGCEST: gi|60347145|gb|DN214118.1|DN214118
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGCEST: gi|211124438|gb|FL004293.1|FL004293
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: GACAGAGGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|211124442|gb|FL004297.1|FL004297
genomic: GACAGAGGG-ACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|22715261|gb|BU197668.1|BU197668
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGGCAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGCEST: gi|211124431|gb|FL004286.1|FL004286
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|211122872|gb|FL004261.1|FL004261
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|211122877|gb|FL004266.1|FL004266
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: -ACAAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCASST GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|211123651|gb|FL004271.1|FL004271
genomic: GACA-GAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGWTGCEST: gi|211124436|gb|FL004291.1|FL004291
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: GACAGAGGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAAGAATGGATGEST: gi|211123653|gb|FL004273.1|FL004273
genomic: GACAGAGGG-ACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGA-GAATGGATG
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|211122095|gb|FL004249.1|FL004249
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|211124441|gb|FL004296.1|FL004296
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|211124440|gb|FL004295.1|FL004295
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|26559425|gb|CA831660.1|CA831660
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGGCAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGCEST: gi|87156724|gb|DY401513.1|DY401513
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGGCAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGCEST: gi|211122101|gb|FL004255.1|FL004255
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|33095529|gb|CF055523.1|CF055523
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAAAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGCEST: gi|211123664|gb|FL004284.1|FL004284
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|211125213|gb|FL004301.1|FL004301
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|211122098|gb|FL004252.1|FL004252
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCEST: gi|211124432|gb|FL004287.1|FL004287
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|211124434|gb|FL004289.1|FL004289
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|211123652|gb|FL004272.1|FL004272
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGCEST: gi|149081286|gb|EE170399.2|EE170399
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGCEST: gi|26558350|gb|CA830585.1|CA830585
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: CGGCAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
caatgctgcttgtgattgactaatggctgcttgattaatgttatgccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGCTCAATTAGCAGCGAAAGATCGAGAGCTAGCCACTCTTACTCGAACG
ttgattaatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtagatacattaatgcaattgactgcatcgtttcgagaatttaccaatgctgcttgtgattgactaatggctgcttgattaatgttatgccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGCTCAATTAGCAGCGAAAGATCGAGAGCTAGCCACTCTTACTCGAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT