1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgtttcttctctacttaagagattcaataggcctttttttgacaatgtaacatgaaatgaagtataatgcttgcagACGATGAAGAATCAAACCAATGTTTTCTTGGTGGCCTTATCATAAGAAATCTAAGCATATG
species | Zea mays |
transcript | GRMZM2G147450_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAACACTGGCGTTAATCCTG ACGATGAAGAATCAAACCAATGTTTTCTTGG-GGCCTAATCATAAGAAATCEST: gi|89252056|gb|DY623842.1|DY623842
genomic: TAACACTGGCGTTAATCCTGgtttgtttct ... atgcttgcagACGATGAAGAATCAAACCAATGTTTTCTTGGTGGCCTTATCATAAGAAATC
EST: ATTTGTCCTGATGACCAATCCCCATATTGGTAACACTGGCGTTAATCCTG ACGATGAAGAATCAAACCAATGTTTTCTTGGTGGCCTTATCATAAGAAATCEST: gi|148945107|gb|EC890301.2|EC890301
genomic: ATTTGTCCTGATGACCAATCCCCATATTGGTAACACTGGCGTTAATCCTGgtttgtttct ... atgcttgcagACGATGAAGAATCAAACCAATGTTTTCTTGGTGGCCTTATCATAAGAAATC
EST: ATTTGTCCTGATGACCAATCCCCATATTGGTAACACTGGCGTTAATCCTG ACGATGAAGAATCAAACCAATGTTTTCTTGGTGGCCTTATCATAAGAAATCEST: gi|148934462|gb|EC878501.2|EC878501
genomic: ATTTGTCCTGATGACCAATCCCCATATTGGTAACACTGGCGTTAATCCTGgtttgtttct ... atgcttgcagACGATGAAGAATCAAACCAATGTTTTCTTGGTGGCCTTATCATAAGAAATC
EST: ATTTGTCCTGATGACCAATCCCCATATTGGTAACACTGGCGTTAATCCTG ACGATGAAGAATCAAACCAATGTTTTCTTGGTGGCCTTATCATAAGAAATC
genomic: ATTTGTCCTGATGACCAATCCCCATATTGGTAACACTGGCGTTAATCCTGgtttgtttct ... atgcttgcagACGATGAAGAATCAAACCAATGTTTTCTTGGTGGCCTTATCATAAGAAATC
attcaataggcctttttttgacaatgtaacatgaaatgaagtataatgcttgcagACGATGAAGAATCAAACCAATGTTTTCTTGGTGGCCTTATCATAAGAAATCTAAGCATATG
atgtaac putative branch site (score: 105)
aaatgaagtataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttcttctctacttaagagattcaataggcctttttttgacaatgtaacatgaaatgaagtataatgcttgcagACGATGAAGAATCAAACCAATGTTTTCTTGGTGGCCTTATCATAAGAAATCTAAGCATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA