1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctcgctcccgttatctgtgataactgaaatagttagctagtggaaaaggtgcttatttgcattcaacagctcatgtatctgatttgtgttttatacctagGGGAATAGTCTTATGAGGATTCTTAGCGTAGCAGCATTTGCTGTTTCTGGATATGCCTCTACAGATGGCAGGAGCTGTAAGCCTTTTAACCCCCTTCTTG
species | Zea mays |
transcript | GRMZM2G147332_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCTGGAGTATTCCTACCTTATTGATCGTGCATCTGAATGGGGGAAAAGG GGGAATAGTCTTATGAGGATTCTTAGCGTAGCAGCATTTGCTGTTTCTGGA
genomic: ATCTGGAGTATTCCTACCTTATTGATCGTGCATCTGAATGGGGGAAAAGGgtatttactt ... ttatacctagGGGAATAGTCTTATGAGGATTCTTAGCGTAGCAGCATTTGCTGTTTCTGGA
aaggtgcttatttgcattcaacagctcatgtatctgatttgtgttttatacctagGGGAATAGTCTTATGAGGATTCTTAGCGTAGCAGCATTTGCTGTTTCTGGATATGCCTCTACAGATGGCAGGAGCTGTAAGCCTTTTAACCCCCTTCTTG
atctgat putative branch site (score: 4)
atttgtgttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcgctcccgttatctgtgataactgaaatagttagctagtggaaaaggtgcttatttgcattcaacagctcatgtatctgatttgtgttttatacctagGGGAATAGTCTTATGAGGATTCTTAGCGTAGCAGCATTTGCTGTTTCTGGATATGCCTCTACAGATGGCAGGAGCTGTAAGCCTTTTAACCCCCTTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- -gctcccg
- - - - - - - - - - -aactgaa
- - - - - - - - - - - - - - - - - -gctagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg