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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggaaccatgagagattattttgtgctcagtgaatctggtctgctgagtgctgacaatttgtctgaaattccttttgtttatgcttttctgtcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCCACCGGTGTAGATCCTACGGAGGAACAATGGAGAGAAATATCCCATCAGT

Basic information

species Zea mays
transcript GRMZM2G146677_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146677_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g14110.1 (Oryza sativa), 3'ss of exon 4
-ggaaccatgagagattattttgtgctcagtgaatctggtctgctgagtgctgacaatttgtctgaaattccttttg-tttatgct--tttctgtcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCCACCGGTGTAGATCCTACGGAGGAACAATGGAGAGAAATATCCCATCAGT
 || ||  | ||   || |    | || |  |   ||  ||||     || |||    ||  ||  |  |||||||  |||||  |  || || |||||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||| || || || |||||||| || |||||||||||||| |||||| | || |
aggtacacttagtttttctcactttcttataggtgct--tctgacc--tgttgatgggtttcctatagctccttttaatttatttttgttcctctcatctgcagAACGCTCCAAATGGTTCATTCTTTTTGCTTCATGCTTGTGCCCATAATCCTACTGGAGTTGATCCTACAGAAGAACAATGGAGAGAGATATCCTACCAAT

upper sequence: GRMZM2G146677_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA06G42830.1 (Glycine max), 3'ss of exon 4
---------------ggaaccatgagagattattttgt-gctcagtgaatctggtctgctgagtgctgacaattt---gtctgaaat-tccttttgtttatgcttttctgt--catctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCCACCGGTGTAGATCCTACGGAGGAACAATGGAGAGAAATATCCCATCAGT
                  |   |      ||  ||| | | ||| |   |   |         | ||   | | |   ||||  ||| | |||   || ||  ||   | |  ||| | |||||||||||||||||||| |||||| |||||||||| |||||||||||||| || || ||||||||| | || |||||||||||||| || ||    ||| 
gtattttgctctcctaacatttttcagacttgctttataggtcaatttttacagatgaagctttactagtactctatagtctataatcttcttaaattaattattaattattacatatacagAATGCTCCAGATGGTTCCTTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGAGTAGATCCTTCAGAAGAACAATGGAGAGAGATCTCTTCCCAGA

upper sequence: GRMZM2G146677_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT2G30970.1 (Arabidopsis thaliana), 3'ss of exon 4
ggaaccatgagagattattttgtgctcagtgaatctggtctgctgagtgctgacaatttgtctgaaattccttttgtttatgcttttctgtcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCCACCGGTGTAGATCCTACGGAGGAACAATGGAGAGAAATATCCCATCAGT
      |  | |||  || || | |     | ||||  | | ||   |  ||  ||    ||  ||     || |||| |  |||||      ||   |||||||||| || || ||||||||  | |||||||| |||||||||||||| || || ||||| ||||| ||||||||||||||||| ||||| || |  |
---gttagcaaagaacatcttcttcaactagcatcttttttacttcttcttgttaac--atcctaa-----ttctgttaagcctttt------tccatagAATGCTCCGGAAGGGTCATTCTTCCTTCTTCATGCTTGTGCTCATAATCCTACTGGAGTAGACCCTACAGAGGAACAATGGAGAGAGATATCACAGCTAT

upper sequence: GRMZM2G146677_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv12s0028g01820.t01 (Vitis vinifera), 3'ss of exon 4
---------------------ggaaccatgagagatt-attttgtgctcagtgaa--tctggtctgctgagtgctgacaatttgtctgaaattccttttgtttatgcttttctgtcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCCACCGGTGTAGATCCTACGGAGGAACAATGGAGAGAAATATCCCATCAGT
                      || |  |||   |||  | |  | ||   | ||  |||| | | |    | |      ||| | |     |   ||| |||||  || | | |  |   |||||||||||| |||| ||||||||| | |||||||| ||||||||||| || || || || |||||| | ||||||||||||| ||| || ||  | ||||
gtacttaggccggactcattgtgatctgtgatttatttgtctcatactgtttaaacttctgttttccatgtttcctttcctttatttatttatttatttatttat--ttatttatttttgacagAATGCTCCAAATGGATCATTCTTTCTACTTCATGCTTGTGCTCATAACCCTACTGGAGTGGATCCTTCAGAGGAACAATGGAAAGAGATCTCATACCAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31349057|gb|CD433414.1|CD433414
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|32839278|gb|CD978959.1|CD978959
EST:     ATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|67018941|gb|CO447690.1|CO447690
EST:     ATCCANAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|32935308|gb|CF040120.1|CF040120
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|6022517|gb|AW067550.1|AW067550
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|31353240|gb|CD437597.1|CD437597
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|67017765|gb|CO446514.1|CO446514
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|32908144|gb|CF012957.1|CF012957
EST:     GGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: GGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|31351617|gb|CD435974.1|CD435974
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|32928193|gb|CF033005.1|CF033005
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|6020423|gb|AW065351.1|AW065351
EST:     ATCCAGAGTCAAGAGGGCTGGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|31361066|gb|CD445423.1|CD445423
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|31353746|gb|CD438103.1|CD438103
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|149010059|gb|EE041864.2|EE041864
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|32847461|gb|CD987142.1|CD987142
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|32847350|gb|CD987031.1|CD987031
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|148957409|gb|EC903466.2|EC903466
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|211237765|gb|FL127825.1|FL127825
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCGGG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|67016435|gb|CO445184.1|CO445184
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTNTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|149105256|gb|EE290747.2|EE290747
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|211502931|gb|FL212594.1|FL212594
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|33100140|gb|CF060100.1|CF060100
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|31349528|gb|CD433885.1|CD433885
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|67016081|gb|CO444830.1|CO444830
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|32934615|gb|CF039427.1|CF039427
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|31356230|gb|CD440587.1|CD440587
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|67028302|gb|CO457051.1|CO457051
EST:     TCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAANATCA-G                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCC
genomic: TCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAA-ATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCC
EST: gi|31361600|gb|CD445957.1|CD445957
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|50323492|gb|CO518618.1|CO518618
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|149080001|gb|EE169021.2|EE169021
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|31355562|gb|CD439919.1|CD439919
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|32836974|gb|CD976652.1|CD976652
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|148932842|gb|EE285571.2|EE285571
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|78110052|gb|DV528467.1|DV528467
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|71444529|gb|DR825579.1|DR825579
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATA
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATA
EST: gi|67010595|gb|CO439344.1|CO439344
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTNTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|149012758|gb|EE042647.2|EE042647
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|31349323|gb|CD433680.1|CD433680
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|31360383|gb|CD444740.1|CD444740
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|31353745|gb|CD438102.1|CD438102
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|31356425|gb|CD440782.1|CD440782
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|211502932|gb|FL212595.1|FL212595
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGANATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|149113112|gb|EE295876.2|EE295876
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|31354884|gb|CD439241.1|CD439241
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|32929962|gb|CF034774.1|CF034774
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGACGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|148962545|gb|EE013420.2|EE013420
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
EST: gi|149095396|gb|EE181036.2|EE181036
EST:     ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAG                         AATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC
genomic: ATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 44 (downstream exon)
Score: 48

CAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATACTACCATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCCACCGGTGTAGATCCTACGGAGGAACAATGGAGAGAAATATCCCATCAGT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 234

CAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATACTACCATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCCACCGGTGTAGATCCTACGGAGGAACAATGGAGAGAAATATCCCATCAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 156

CAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATACTACCATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCCACCGGTGTAGATCCTACGGAGGAACAATGGAGAGAAATATCCCATCAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 101

CAATATTTGGAGGGATGCTCAAGTGCCACAGAAGACATTCACATACTACCATCCAGAGTCAAGAGGGCTTGATTTCTCAGGATTGATGAATGAAATCAAGgtggttcatt ... tcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCCACCGGTGTAGATCCTACGGAGGAACAATGGAGAGAAATATCCCATCAGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgctgacaatttgtctgaaattccttttgtttatgcttttctgtcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCCACCGGTGTAGATCCTACGGAGGAACAATGGAGAGAAATATCCCATCAGT
  tgctgac  putative branch site (score: 101)
                                     cttttctgtcatct  putative PPT
                          ttttgtttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggaaccatgagagattattttgtgctcagtgaatctggtctgctgagtgctgacaatttgtctgaaattccttttgtttatgcttttctgtcatctgcagAATGCTCCAGATGGTTCATTCTTTTTGCTTCATGCATGTGCTCATAATCCCACCGGTGTAGATCCTACGGAGGAACAATGGAGAGAAATATCCCATCAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - ccatgag
- - - - - - - - - - tgtgctc
- - - - - - - - - - - - - - gtgaatc
- - - - - - - - - - - - - - - - - - - tctgctg
- - - - - - - - - - - - - - - - - - - - - - - -tgctgac