Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttctgaatttctattacaattcacaatgtttcatgatatgaatgcatactattgtgccgcctttctatgcaacatttttgcaagatttgtgttgtttacttgaattttattactgcagAATGAAAAAGAGTGTGCTTATTATTTAAGAACAGGGCAGTGCAAGTTTGGAAGCACATGTAAGTTTCACCATTCACAACCATCCACCATGATGGTTGCTG

Basic information

species Zea mays
transcript GRMZM2G146514_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146514_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os12g21700.1 (Oryza sativa), 3'ss of exon 4
gtttgttctgaatttctattacaattcacaatgtttcatgat-atgaatgcatactattgtgccgcctttctatgcaacatttttgcaagatttg-tgttgtttacttgaattttattactgcagAATGAAAAAGAGTGTGCTTATTATTTAAGAACAGGGCAGTGCAAGTTTGGAAGCACATGTAAGTTTCACCATTCACAACCATCCACCATGATGGTTGCTG
||||||||   | ||||||   |||| |   |||  | ||||     |  | || |||  ||    ||  || |  | | |   ||||||||| | | |  || ||||| | |||||||||||||||||| || || |||||||| || ||||||||||||||||| || |||| |||||||||||||||||| ||| |||| || || |  |  ||||||||||
gtttgttccataattctat---aattta-gttgtcacctgattgcttaatcgtaatatc-tgttctctacctct-tagcttgcatgcaagattagctttcattaacttgcagtttattactgcagAATGAGAAGGAATGTGCTTACTACTTAAGAACAGGGCAGTGTAAATTTGCAAGCACATGTAAGTTTCATCATCCACAGCCCTCTAATACAATGGTTGCTG

upper sequence: GRMZM2G146514_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os11g28270.1 (Oryza sativa), 3'ss of exon 4
gtttgttctgaatttctattacaattcacaatgtttcatgatatgaatgcatactattgtgccgcctttctatgcaacatttttgcaagatttgtgttgtttacttgaattttattactgcagAATGAAAAAGAGTGTGCTTATTATTTAAGAACAGGGCAGTGCAAGTTTGGAAGCACATGTAAGTTTCACCATTCACAACCATCCACCATGATGGTTGCTG
||||||||| |||||| ||||   || || ||   |  |   |   | | ||| |         | ||  | |||||| | | ||||| |||||| ||  |||| | |||||||||||  |||||||| || || || ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| ||| |||| ||||| |  | |||||||||||
gtttgttctaaatttccattatcttttactattacttgttggacttaaggatagtt--------cattattctgcaacttctctgcaatatttgttttagttacctaaattttattaccacagAATGAGAAGGAATGCGCTTATTATTTAAGAACCGGACAGTGCAAATTTGGGAGCACATGTAAGTTTCATCATCCACAGCCATCTAATACGATGGTTGCTG

upper sequence: GRMZM2G146514_T03 (Zea mays), 3'ss of exon 4
lower sequence: Vv04s0023g00370.t01 (Vitis vinifera), 3'ss of exon 4
gtttgttctgaatttctattacaattcacaatgtttcatgatatgaatgcatactattgtgccgcctttctatgcaacatttttgcaagatttgtgttgtttacttgaattttattactgcagAATGAAAAAGAGTGTGCTTATTATTTAAGAACAGGGCAGTGCAAGTTTGGAAGCACATGTAAGTTTCACCATTCACAACCATCCACCATGATGGTTGCTG
                   | ||  | ||| ||    |     || ||        ||||||  | ||  |  |    | ||||  |    |  || | ||  ||    |||  ||  || || |||| |  || |||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||| | |||||||| |  ||||||||| |  
-------------------tgcacctgacattgccaaagctcctgcattttagtgtttgtgcttctttggtgggatgaaattttata----tcctgattttccctgttctttctttcgtgtagGATGAGATTGACTGTGCTTATTATTTAAGAACTGGACAGTGCAAGTTTGGAAGTACATGTAAATTTCACCATCCTCAACCATCTAGTATGATGGTTTCAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56691598|gb|CX129501.1|CX129501
EST:     CAATGGCAACTCGAGTTCAGTTGAATGAACTGGGCTACCCACTCCGCCCG                         AATGAAAAAGAGTGTGCTTATTATTTAAGAACAGGGCAGTGCAAGTTTGGA
genomic: CAATGGCAACTCGAGTTCAGTTGAATGAACTGGGCTACCCACTCCGCCCGgtttgttctg ... attactgcagAATGAAAAAGAGTGTGCTTATTATTTAAGAACAGGGCAGTGCAAGTTTGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatgcaacatttttgcaagatttgtgttgtttacttgaattttattactgcagAATGAAAAAGAGTGTGCTTATTATTTAAGAACAGGGCAGTGCAAGTTTGGAAGCACATGTAAGTTTCACCATTCACAACCATCCACCATGATGGTTGCTG
                                         ttttatt  CT-rich tract
                            ttgtttacttgaattt  TA-rich tract