Sequence
atgc intronic sequence ATGC exonic sequencegtatgtggtatttcataggtttatatgcaaatcttttgtaggctataaaattcaaatcctgtcatttgcagCCATGGTTTGAGGACAGGAATCTTTGAAGCAAGCAAGCTTGTATTAATTAATGTCGCTCCAACACTTCCAGAGATTCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G146378_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os11g01270.1 (Oryza sativa), 3'ss of exon 4
gtatgtggtatttcataggtttatatgcaaatcttt-tgtaggctataaaattcaaatcctgtcatttgcagCCATGGTTTGAGGACAGGAATCTTTGAAGCAAGCAAGCTTGTATTAATTAATGTCGCTCCAACACTTCCAGAGATTCAA
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gttagtgtcaattcagagttttagaggcaaatttgaatgtaggctgcaaa-ttcacatcctgccatttgcagCCATGGTTTGAGAACAGGAATATTTGAGGCAAGCAAGCTTGTGTTAAAAAGTGTTGCTCCAACACTTCCAGATATTCAG
upper sequence: GRMZM2G146378_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os12g01240.1 (Oryza sativa), 3'ss of exon 4
gtatgtggtatttcataggtttatatgcaaatcttt-tgtaggctataaaattcaaatcctgtcatttgcagCCATGGTTTGAGGACAGGAATCTTTGAAGCAAGCAAGCTTGTATTAATTAATGTCGCTCCAACACTTCCAGAGATTCAA
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gttagtgtcgattcagagttttagaggcaaatttgaatgtaggctgcata-ttcacatcctgccatttgcagCCATGGTTTGAGAACAGGAATATTTGAGGCAAGCAAGCTTGTGTTAAAAAGTGTTGCTCCAACACTTTCAGATATTCAG
upper sequence: GRMZM2G146378_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv13s0019g03870.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------gtatgtggtat-ttcataggtttatatgcaaatcttttgtaggctataaaattcaaa-tcctgtcatttgcagCCATGGTTTGAGGACAGGAATCTTTGAAGCAAGCAAGCTTGTATTAATTAATGTCGCTCCAACACTTCCAGAGATTCAA
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tttatttattgatcagtagcaaagagaatatattgaagatttaaagaactgtacaccaaggtacacaggtcgagctaatgtgttcttttatttgttacagCCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTGATAAATGTTGCTCCTACCCTTCCAGAGATCCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16927206|gb|BM080275.1|BM080275EST: CGGCCAGTTTTCAAG CCATGGTTTGAGGACAGGAATCTTTGAAGCAAGCAAGCTTGTATTAATTAA
genomic: CGGCCAGTTTTCAAGgtatgtggta ... tcatttgcagCCATGGTTTGAGGACAGGAATCTTTGAAGCAAGCAAGCTTGTATTAATTAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggtttatatgcaaatcttttgtaggctataaaattcaaatcctgtcatttgcagCCATGGTTTGAGGACAGGAATCTTTGAAGCAAGCAAGCTTGTATTAATTAATGTCGCTCCAACACTTCCAGAGATTCAA
tcctgtc CT-rich tract
tataaaattcaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtggtatttcataggtttatatgcaaatcttttgtaggctataaaattcaaatcctgtcatttgcagCCATGGTTTGAGGACAGGAATCTTTGAAGCAAGCAAGCTTGTATTAATTAATGTCGCTCCAACACTTCCAGAGATTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT