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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaaaacacaaaccatgaagcagcagcgtcgttatatatatatgttcgtgctaaaaatctgccacttcatcagacattccagacggcaattaatctgcaaatcacactcccacctgttattttttttgtctttcttttcagTTCCTTTCCATGAGGATTGCCTCCATGAGCCCAGTGCTGTACGGGTTCGGAACGAACAGTGAAGGCCTTCATGATCATCACGCACCA

Basic information

species Zea mays
transcript GRMZM2G145579_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145579_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g42470.1 (Oryza sativa), 3'ss of exon 4
gtaataaaaacacaaaccatgaagcagcagcgtcgttatatatatatgttcgtgctaaaaatctgccacttcatcagacattccagacggcaattaatctgcaaatcacactcccacctgttattttttttgtctttctt-ttcagTTCCTTTCCATGAGGATTGCCTCCATGAGCCCAGTGCTGTACGGGTTCGGAACGAACAGTGAAGGCCTTCATGATCATCACGCACCA
                                  ||    || | |          ||| |  |   |||||||      ||  | |        | | || | |  |       || | || ||| |||||||| | |  | |||||||| |||||||||||||| || |||||||||||| |||| || || |||| | |||| || ||||| ||||| ||          
----------------------------------gtacactaaaaaaaaataaaaaaaagaagtaatacttcatt-----tttgaaa--------actttggacaggatg-----acattttctttgttttgtctatatggtgcagTTCCTATCCATGAGGATTGCTTCAATGAGCCCAGTGTTGTATGGCTTTGGAATGGACAGCGATGGCCTCCATGACCAA---------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattaatctgcaaatcacactcccacctgttattttttttgtctttcttttcagTTCCTTTCCATGAGGATTGCCTCCATGAGCCCAGTGCTGTACGGGTTCGGAACGAACAGTGAAGGCCTTCATGATCATCACGCACCA
 aattaat  putative branch site (score: 3)
                  cactcccacctgttat  putative PPT
                              ttattttttttgtctt  TA-rich tract