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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtactgcatcaaataaacggagatgatcagatgaatatatcagctgtcttactcgactgctgacctcaggactgagaatatgtggtgccgcttcaatggctatttgcaggtcaggccgtgtgtatgtcgtcgacacagcgacagacccaagggcgccatccttgcaatagGTGGTTGAGTCCGAGGACATTGCTGAGAATACTGGGCTTGGGTTCCCTCACATGTCTCATTGCCTTGCGTCTGGCGACATTATGATTTCTTGCCTTGGGG

Basic information

species Zea mays
transcript GRMZM2G144594_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144594_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g68770.1 (Oryza sativa), 3'ss of exon 2
gtgagtactgcatcaaataaacggagatgatcagatgaatatatcagctgtcttactcgactgctgacctcaggactgagaatatgtggtgccgcttcaatggctatttgcaggtcaggccgtgtgtatgtcgtcgacacagcgacagacccaagggcgccatccttgcaatagGTGGTTGAGTCCGAGGACATTGCTGAGAATACTGGGCTTGGGTTCCCTCACATGTCTCATTGCCTTGCGTCTGGCGACATTATGATTTCTTGCCTTGGGG
||||||  |        || |   |||||    |||||||         || |   | || || | | |   | ||||   || |||      ||| ||||| || || ||||||| ||||||||||||||||| |||||   ||  ||||||||||||||  |||||||  ||||||| ||| | ||||||||||||||||| || ||||||                                                             
gtgagtgttaatgtggctatatttagatggatggatgaatcc-----tcgtatctgttga-tgttaaacagcgaactgg--atttgtaa-attgctccaatgtctgtt-gcagGTCTGGCCGTGTGTATGTCGTTGACACGCTGAAGGACCCAAGGGCGCCTGCCTTGCATAAGGTGGTCGAGGCTGAGGACATTGCTGAGAAGACAGGGCTT-------------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgtgtgtatgtcgtcgacacagcgacagacccaagggcgccatccttgcaatagGTGGTTGAGTCCGAGGACATTGCTGAGAATACTGGGCTTGGGTTCCCTCACATGTCTCATTGCCTTGCGTCTGGCGACATTATGATTTCTTGCCTTGGGG
                                        ccatcctt  CT-rich tract