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gtatgttgtacaacttttatgtttatcatcgtcatctttttttcccttccctttatatttccacataaaaaaaagaatgttgtatccttttgagattccatgaatttttttgtatcctttagGTCAACAGTGAGCACCCCCTGGCAAAAGCGATAGTGGAGCATGCCAAAAAGTTGCGTCCAGAAGGAAACCACATGTGGCCGGAAGCAAGGGAATTTATTT
species | Zea mays |
transcript | GRMZM2G144083_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCAAAAATATGGTCTTGCGTGAATTCTATGACTATGCTGCTGCTGCAGAA GTCAACAGTGAGCACCCCCTGGCAAAAGCGATAGTGGAGCATGCCAAAAAGEST: gi|160481620|gb|EY254452.1|EY254452
genomic: TCAAAAATATGGTCTTGCGTGAATTCTATGACTATGCTGCTGCTGCAGAAgtatgttgta ... tatcctttagGTCAACAGTGAGCACCCCCTGGCAAAAGCGATAGTGGAGCATGCCAAAAAG
EST: TCAAAAATATGGTCTTGCGTGAATTCTATGACTATGCTGCTGCTGCAGAA GTCAACAGTGAGCACCCCCTGGCAAAAGCGATAGTGGAGCATGCCAAAAAGEST: gi|160481581|gb|EY254413.1|EY254413
genomic: TCAAAAATATGGTCTTGCGTGAATTCTATGACTATGCTGCTGCTGCAGAAgtatgttgta ... tatcctttagGTCAACAGTGAGCACCCCCTGGCAAAAGCGATAGTGGAGCATGCCAAAAAG
EST: TCAAAAATATGGTCTTGCGTGAATTCTATGACTATGCTGCTGCTGCAGAA GTCAACAGTGAGCACCCCCTGGCAAAAGCGATAGTGGAGCATGCCAAAAEST: gi|148967967|gb|EE019285.2|EE019285
genomic: TCAAAAATATGGTCTTGCGTGAATTCTATGACTATGCTGCTGCTGCAGAAgtatgttgta ... tatcctttagGTCAACAGTGAGCACCCCCTGGCAAAAGCGATAGTGGAGCATGCCAAAA
EST: TCAAAAATATGGTCTTGCGTGAATTCTATGACTATGCTGCTGCTGCAGAA GTCAACAGTGAGCACCCCCTGGCAAAAGCGATAGTGGAGCATGCCAAAAAG
genomic: TCAAAAATATGGTCTTGCGTGAATTCTATGACTATGCTGCTGCTGCAGAAgtatgttgta ... tatcctttagGTCAACAGTGAGCACCCCCTGGCAAAAGCGATAGTGGAGCATGCCAAAAAG
aaaaaaagaatgttgtatccttttgagattccatgaatttttttgtatcctttagGTCAACAGTGAGCACCCCCTGGCAAAAGCGATAGTGGAGCATGCCAAAAAGTTGCGTCCAGAAGGAAACCACATGTGGCCGGAAGCAAGGGAATTTATTT
tttttttgtatccttt CT-rich tract
atgaatttttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgtacaacttttatgtttatcatcgtcatctttttttcccttccctttatatttccacataaaaaaaagaatgttgtatccttttgagattccatgaatttttttgtatcctttagGTCAACAGTGAGCACCCCCTGGCAAAAGCGATAGTGGAGCATGCCAAAAAGTTGCGTCCAGAAGGAAACCACATGTGGCCGGAAGCAAGGGAATTTATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG