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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcataatgtttgttgtttacttctttaatgtctgattgtaaaatatgtgcaaatgtttctttagGTGCAAGGAAGAGATCAACTTTATGTTAAATTTGTAGTGGATCAGTTAGGTTTGGATGGTTCTTATATACTATGCACATATATTGAACAAATTCAGTTGG

Basic information

species Zea mays
transcript GRMZM2G143804_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143804_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g47860.2 (Oryza sativa), 3'ss of exon 7
---------------------------------------------------------------------------gtgagcataatgtttgttgtttacttctttaatgtctgattgtaaaatatgtgcaaatg--tttctttagGTGCAAGGAAGAGATCAACTTTATGTTAAATTTGTAGTGGATCAGTTAGGTTTGGATGGTTCTTATATACTATGCACATATATTGAACAAATTCAGTTGG
                                                                            |    || ||  ||  | | ||     ||  |  |    || | || || |     ||  |||  |||||||||||||||||||  |  | |||| |||||||||| |||  |||||||| ||||||| |||||||| | | ||||||||||||||||||||||| |||
gtaagaacactcttgctatttgattgcagttctctttcaacatgatctttctctgtgcacatcttgactgatactctagttattattatttgtatctatccacttgttaacaagatgcataaaatattatgttgctttttcttagGTGCAAGGAAGAGATAGAAATCATGTCAAATTTGTAGCGGAGAAGTTAGGTCTGGATGGCTCTTATATTCCACGCACATATATTGAACAAATTCAGCTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttgtttacttctttaatgtctgattgtaaaatatgtgcaaatgtttctttagGTGCAAGGAAGAGATCAACTTTATGTTAAATTTGTAGTGGATCAGTTAGGTTTGGATGGTTCTTATATACTATGCACATATATTGAACAAATTCAGTTGG
                    gtctgat  putative branch site (score: 4)
                                            tgtttcttt  putative PPT
      tttacttctttaat  TA-rich tract