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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcgtttttatctgtgtttttaatttttttttctgagtgccatctttttattttatcccttaatgactcacataattactgccacttattcttttagATTGTTGCAAAGACCATAAAATCATGCCTCGATGAACTTCCAGGCTTTCCGCGAACACAGATTGGATTCTTAACATTTGACAGTACCTTGCATTTTCATA

Basic information

species Zea mays
transcript GRMZM2G143725_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143725_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g04020.1 (Oryza sativa), 3'ss of exon 4
------------------------------------------gtatcgtttttatctgtgtttttaatttttttttctga--gtgc--catctttttatt--ttatccctt--aat---gactcacataattactgccact-tattcttttagATTGTTGCAAAGACCATAAAATCATGCCTCGATGAACTTCCAGGCTTTCCGCGAACACAGATTGGATTCTTAACATTTGACAGTACCTTGCATTTTCATA
                                          | ||| | ||| ||| |||   | ||  | | | ||    ||||  ||| || ||||   |||| | ||  | |   || ||| | || | |      |  ||||||| || |||||||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||||| ||||| || || ||||| |||||||
gtatgtgctatttgttttgcagtttgatttcaatcacttaggggatcatatttttctctgtaactcataatatgtactagtggtgcagcatattcttataggttatgctttgtagtttggattcaaacaaattcaatgcttgcattctttcagGTTGTTGCAAAGACCATCAAATCATGCCTTGATGACCTCCCAGGGTTTCCACGAACACAGATTGGATTCTTAACTTTTGATAGCACATTGCACTTTCATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttttattttatcccttaatgactcacataattactgccacttattcttttagATTGTTGCAAAGACCATAAAATCATGCCTCGATGAACTTCCAGGCTTTCCGCGAACACAGATTGGATTCTTAACATTTGACAGTACCTTGCATTTTCATA
                      gactcac  putative branch site (score: 2)
                                       ccacttattctttt  putative PPT
                                           ttattctttta  TA-rich tract