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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgatagctattgaatatatcatattatacacagccagtaaatttcaaattaaaatctgttttttttcagAGCTGCGGAATTCTTGAAACAAGTCCTTAAAGCTTACAGCTTAAGATATATTAAGGCTGCCCGTATGCTTGGTGACCAATTAGCACTTGCATGGGTTGTC

Basic information

species Zea mays
transcript GRMZM2G143688_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143688_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os06g37430.1 (Oryza sativa), 3'ss of exon 4
gtaagttgatagctattgaatatatcatattatacacagccagtaaatttcaaatta--aaatctgtttttt----ttcagAGCTGCGGAATTCTTGAAACAAGTCCTTAAAGCTTACAGCTTAAGATATATTAAGGCTGCCCGTATGCTTGGTGACCAATTAGCACTTGCATGGGTTGTC
||||||| ||  ||||  |  || |  || |||| | ||     ||   | | || |  |||| | ||||||    || || |||   |||||||| ||| |||||||| | || |||  ||| |  |||||  ||||| |||| ||||||||||| ||||||||||| ||||||||||| 
gtaagtt-atgtctatgaagcatct--taatatagaaagatgacaatgcttatataactaaatttattttttggcttttagGGCTATTGAATTCTTCAAAGAAGTCCTTGAGGCATACTACTTGAAGTATATGGAGGCTTCCCGCATGCTTGGTGATCAATTAGCACTGGCATGGGTTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78021975|gb|DV490362.1|DV490362
EST:     GAACCAGGGATGGCATCACTAA                         AGCTGCGGAATTCTTGAAACAAGTCCTTAAAGCTTACAGCTTAAGATATAT
genomic: GAACCAGGGATGGCATCACTAAgtaagttgat ... tttttttcagAGCTGCGGAATTCTTGAAACAAGTCCTTAAAGCTTACAGCTTAAGATATAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatcatattatacacagccagtaaatttcaaattaaaatctgttttttttcagAGCTGCGGAATTCTTGAAACAAGTCCTTAAAGCTTACAGCTTAAGATATATTAAGGCTGCCCGTATGCTTGGTGACCAATTAGCACTTGCATGGGTTGTC
                                        tctgttttttttc  CT-rich tract
                     agtaaatttcaaatta  TA-rich tract