1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attcaacaaaatatatgtttgagttgttttttttaaatgactagttgtttcaatgcttcagactttagagactgaacttctcatgcttcaaatgtggcagTGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAAAATAAATTTACCTACCTATTTTATGGAATGGATTAACTTGAAGGATATC
species | Zea mays |
transcript | GRMZM2G143525_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTG TGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAAEST: gi|89756149|gb|DY686295.1|DY686295
genomic: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTGgtaacctaat ... aatgtggcagTGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAA
EST: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTG TGGAAACTGGGATTTGAAGACAA-GGTCCCTGAGCAGTGCAAGGTTTCAAAEST: gi|71758607|gb|DR956544.1|DR956544
genomic: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTGgtaacctaat ... aatgtggcagTGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAA
EST: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTG TGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAAEST: gi|93015209|gb|EB640729.1|EB640729
genomic: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTGgtaacctaat ... aatgtggcagTGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAA
EST: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTG TGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAAEST: gi|211067166|gb|FL447230.1|FL447230
genomic: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTGgtaacctaat ... aatgtggcagTGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAA
EST: GAGCATTTGTTACTTG TGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAAEST: gi|71437404|gb|DR818454.1|DR818454
genomic: GAGCATTTGTTACTTGgtaacctaat ... aatgtggcagTGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAA
EST: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTG TGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAAEST: gi|89758511|gb|DY687667.1|DY687667
genomic: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTGgtaacctaat ... aatgtggcagTGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAA
EST: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTG TGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAAEST: gi|211396340|gb|FL436997.1|FL436997
genomic: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTGgtaacctaat ... aatgtggcagTGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAA
EST: GATCACTCAACCGTGGAGCATTTGTTACTTG TGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAAEST: gi|4647496|gb|AI622571.1|AI622571
genomic: GATCACTCAACCGTGGAGCATTTGTTACTTGgtaacctaat ... aatgtggcagTGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAA
EST: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTG TGGAAANCTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAEST: gi|16380290|gb|BI993413.1|BI993413
genomic: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTGgtaacctaat ... aatgtggcagTGGAAA-CTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAA
EST: TGGAAAAAGGAGCAAGGTGGATCACTCAGCCGTGGAGCATTTGTTACTTG TGGAATCTGGGATTTGAAGTCAAAGGTCCCTGAGCAGTGCAAGGTTTCAAAEST: gi|50323087|gb|CO518213.1|CO518213
genomic: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTGgtaacctaat ... aatgtggcagTGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAA
EST: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTG TGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAA
genomic: TGGAAAAAGGAGCAAGGTGGATCACTCAACCGTGGAGCATTTGTTACTTGgtaacctaat ... aatgtggcagTGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAA
tgtttcaatgcttcagactttagagactgaacttctcatgcttcaaatgtggcagTGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAAAATAAATTTACCTACCTATTTTATGGAATGGATTAACTTGAAGGATATC
ttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcaacaaaatatatgtttgagttgttttttttaaatgactagttgtttcaatgcttcagactttagagactgaacttctcatgcttcaaatgtggcagTGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAAAATAAATTTACCTACCTATTTTATGGAATGGATTAACTTGAAGGATATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - aacaaaa
- - - - - - - atgtttg
- - - - - - - - - - - gttgttt
- - - - - - - - - - - - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcttcag