1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaatttgctatgctgcttattgcttaacttgagaaagggagtttgaattatcctattagggaaaaaatattgtgaggggtgccaaaattatggatcccaccgattttatacccatataacataaccttttgttgtctattctagtcatatcaactcaatacatatctatggaagtatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG
species | Zea mays |
transcript | GRMZM2G143213_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|21390004|gb|BQ528053.1|BQ528053
genomic: CGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|17929629|gb|BM266589.1|BM266589
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: AGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|60397283|gb|DN230099.1|DN230099
genomic: AGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|6020558|gb|AW065591.1|AW065591
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACACATGAG GTAGTGACATTATGGTACCAGAGCTCCAGAAATTCTTCTTGGAGCGAGACAEST: gi|78074515|gb|DV502949.1|DV502949
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTAC-AGAGCTCCAGAAATCCTTCTTGGAGCGAGACA
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|18162372|gb|BM332211.1|BM332211
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|110194217|gb|EC876115.1|EC876115
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|31910663|gb|CD651537.1|CD651537
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|67024512|gb|CO453261.1|CO453261
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|18167215|gb|BM337054.1|BM337054
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|22542162|gb|BU092600.1|BU092600
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|78025082|gb|DV493469.1|DV493469
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCTTTCTTGGAGCGAGACAGEST: gi|60398759|gb|DN231575.1|DN231575
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|5847313|gb|AW000392.1|AW000392
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACACATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTTCTTGGAGCGAGACAGEST: gi|211268426|gb|FL478582.1|FL478582
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|60394332|gb|DN227202.1|DN227202
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|4967063|gb|AI692029.1|AI692029
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: CCGT-CATTT-CTCAT-AG GTAGTGACATTATGGT-CAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|27575994|gb|CA998688.1|CA998688
genomic: CCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|60394730|gb|DN227600.1|DN227600
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|32916297|gb|CF021109.1|CF021109
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|31909621|gb|CD651010.1|CD651010
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|78093070|gb|DV521444.1|DV521444
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGEST: gi|60398446|gb|DN231262.1|DN231262
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTTCTTGGAGCGAGACAGEST: gi|60344999|gb|DN211972.1|DN211972
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACACATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
tgttgtctattctagtcatatcaactcaatacatatctatggaagtatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG
tatttttc CT-rich tract
aagtattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttgctatgctgcttattgcttaacttgagaaagggagtttgaattatcctattagggaaaaaatattgtgaggggtgccaaaattatggatcccaccgattttatacccatataacataaccttttgttgtctattctagtcatatcaactcaatacatatctatggaagtatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG
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