1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggcgtaccccttgctagagagctctctgtagtactatgtaggatactgtggttattcttaacaagaaagaaaggcttaaattattattattgtgtgcagATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACATCTGATGATTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAAC
species | Zea mays |
transcript | GRMZM2G142984_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAG ATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGAAGACAEST: gi|149070923|gb|EE159330.2|EE159330
genomic: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAGgtaatcacca ... ttgtgtgcagATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACA
EST: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAG ATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACAEST: gi|149000223|gb|EE037369.2|EE037369
genomic: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAGgtaatcacca ... ttgtgtgcagATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACA
EST: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAG ATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACAEST: gi|89758395|gb|DY687589.1|DY687589
genomic: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAGgtaatcacca ... ttgtgtgcagATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACA
EST: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAG ATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACAEST: gi|149102743|gb|EE188274.2|EE188274
genomic: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAGgtaatcacca ... ttgtgtgcagATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACA
EST: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAG ATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACAEST: gi|67016231|gb|CO444980.1|CO444980
genomic: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAGgtaatcacca ... ttgtgtgcagATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACA
EST: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAG ATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGNNNNNNNGAAGACEST: gi|148965239|gb|EC906094.2|EC906094
genomic: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAGgtaatcacca ... ttgtgtgcagATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAA-GATGAC
EST: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAG ATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACAEST: gi|211448014|gb|FL403750.1|FL403750
genomic: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAGgtaatcacca ... ttgtgtgcagATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACA
EST: CTTTGTATTTTCAGTATGGCATAAAACTGCATAATGTGATGGATACACAG ATTGCTTATTCTCTGATAGAAGAGCACGAGCAGGAAGGACAAAAGATGACAEST: gi|211115805|gb|FL350299.1|FL350299
genomic: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAGgtaatcacca ... ttgtgtgcagATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACA
EST: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAG ATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGAAGACAEST: gi|148995982|gb|EE035233.2|EE035233
genomic: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAGgtaatcacca ... ttgtgtgcagATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACA
EST: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAG ATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACA
genomic: CTTTGTATTTTCAGTTTGGCATAAAACTGCATAATGTGATGGATACACAGgtaatcacca ... ttgtgtgcagATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACA
actgtggttattcttaacaagaaagaaaggcttaaattattattattgtgtgcagATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACATCTGATGATTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAAC
tcttaac putative branch site (score: 495)
aaaggcttaaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcgtaccccttgctagagagctctctgtagtactatgtaggatactgtggttattcttaacaagaaagaaaggcttaaattattattattgtgtgcagATTGCTTATTCTCTGATAGAAGAGCAGGAGCAGGAAGGAAAAAAGATGACATCTGATGATTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - -ccttgct
- - - - - - - - - - - - - - - - - - - - - gatactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa