Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctgccagttctatattaccataacaaatagataccgatgctcaatacctctccgctcatttgaactgtcgtgaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAAGGCGGAGGTGAGCAAGTCCCAGAAGACGCAGACAAAGGGTGCGGTCCAG

Basic information

species Zea mays
transcript GRMZM2G142640_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G142640_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 5
------------gtatgtctgccagt-tctatattaccataacaaatagataccgatgct-caatacctctccgctcatttgaactgtcgtgaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAAGGCGGAGGTGAGCAAGTCCCAGAAGACGCAGACAAAGGGTGCGGTCCAG
             |||  |  |  || | |  || | | |   | ||| ||  ||||| | | | |   ||    |||| ||| ||   |  |   ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| | ||||||||||||| ||||| | |||||||| | || |
atgcataatcccctattgcatcttgtgtatgcataatcctccgatatacatttcgatgatgctaaaggactaaattcatctgagcttatgc-attgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAGGCTGAGGTAACCAAGTCCCAGAAGTCGCAGTCGAAGGGTGCCGCCCCG

upper sequence: GRMZM2G142640_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g40820.2 (Oryza sativa), 3'ss of exon 5
------------gtatgtctgccagt-tctatattaccataacaaatagataccgatgct-caatacctctccgctcatttgaactgtcgtgaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAAGGCGGAGGTGAGCAAGTCCCAGAAGACGCAGACAAAGGGTGCGGTCCAG
             |||  |  |  || | |  || | | |   | ||| ||  ||||| | | | |   ||    |||| ||| ||   |  |   ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||                                                
atgcataatcccctattgcatcttgtgtatgcataatcctccgatatacatttcgatgatgctaaaggactaaattcatctgagcttatgc-attgtgcagTGAGATCAAGGAACGCATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAG------------------------------------------------

upper sequence: GRMZM2G142640_T03 (Zea mays), 3'ss of exon 4
lower sequence: AT2G36620.1 (Arabidopsis thaliana), 3'ss of exon 4
----gtatgtctgccagttcta--tattac-cataacaaatagataccgatgctcaatacctctccgctcatttgaactgtcgtgaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAAGGCGGAG---GTGAGCAAGTCCCAGAAGACGCAGACAAAGGGTGCGGTCCAG
    || | | | ||      |   | ||   | | ||| |   |   ||  || ||      |    |||     | | |  |||  ||||||||||||||||||| | ||||||||||||||||| |||||||| || |||||||  |||   |     |||   |||||| | ||    |||||     ||   
gtttgtttctttcccgaagacagtcactatatacatcaatttttttttgaaactgaaatgtgattgattcaaagctaatctgatgattatgcagTGAGATCAAGGAGAGAATCAAGAAGACCAAGGACGAGAAGAAGGCAAAGAAGGTCGAGTATGCATCAAAGCAACAGAAGTCACAAGTGAAGGGAAATATC---

upper sequence: GRMZM2G142640_T03 (Zea mays), 3'ss of exon 4
lower sequence: Vv16s0100g00650.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------gtatgtctgccagttct---atattaccataacaaatagataccgatgctcaatacctctc-cgctcatttgaactgtcgtg-accatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAAGGCGGAGGTGAG---CAAGTCCCAGAAGACGCAGACAAAGGGTGCGGTCCAG
                        ||  | |||  | |||   | ||  | ||    |  |  || |  ||  | | |  |  |   || | ||| | | |  || | | |||||||| || || ||| | |||||||| ||||||||||| |||||||| |||||||| ||||| |    |||| | ||||| || ||||  ||||||| |      
gtgggtatcattccttgaactttctaaatttgctgggtctcccaaatacctattgttagcacttagcagtgggcgaaattttccattctgaattgcattattctgtaacctgcagTGAAATTAAAGAGAGGATCAAGAAAACCAAGGATGAAAAGAAAGCCAAGAAGGCTGAGGTAATGGCCAAGACGCAGAAAACTCAGAGCAAGGGTGTGCCT---

upper sequence: GRMZM2G142640_T03 (Zea mays), 3'ss of exon 4
lower sequence: Vv13s0074g00140.t01 (Vitis vinifera), 3'ss of exon 4
gtatgtctgccagttctatattaccataacaaatagataccgatgct-----caatacctctccgctcatt--------tgaactgtcgtg-accatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAAGGCGGAGGTGAG---CAAGTCCCAGAAGACGCAGACAAAGGGTGCGGTCCAG
  |  ||||  | | | | |  | |  | |   |||   ||  |         ||||  | ||   | |||        ||||  | | |  |   |||||||| || |||||| |  ||||||| |||||||||||||||||||| ||||| || || ||||    |||  | |||||| | ||||  ||||||   |     
-aagctctgttactgcaacaagaaccaaccgcttagccccctgtttgagtggtaataggtttcttttaattctatcttctgaagagccttataatgtgcagTGAAATTAAGGAGAGGGTCAAGAAAACCAAGGATGAGAAGAAAGCAAAGAAAGCAGAAGTGATGGCCAAAACTCAGAAGTCTCAGAGCAAGGGTAATGCA---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9952995|gb|BE639578.1|BE639578
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|28984708|gb|BQ539414.2|BQ539414
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|5456231|gb|AI833921.1|AI833921
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|67024843|gb|CO453592.1|CO453592
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|24767969|gb|CA403102.1|CA403102
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|60339160|gb|DN206133.1|DN206133
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|211529720|gb|FL481427.1|FL481427
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAGGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|78025581|gb|DV493968.1|DV493968
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|12971416|gb|BG267471.1|BG267471
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|60338669|gb|DN205642.1|DN205642
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|16926354|gb|BM079422.1|BM079422
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|86470272|gb|DY236642.1|DY236642
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|211183624|gb|FL445774.1|FL445774
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTYG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|16137349|gb|BI894214.1|BI894214
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|78077048|gb|DV505482.1|DV505482
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|78027478|gb|DV495865.1|DV495865
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|211257978|gb|FL453225.1|FL453225
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|76020605|gb|DT947775.1|DT947775
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTTTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|60346601|gb|DN213574.1|DN213574
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|14569193|gb|BI097516.1|BI097516
EST:     GAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: GAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|211508115|gb|FL240712.1|FL240712
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|32912322|gb|CF017134.1|CF017134
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|32858460|gb|CD998141.1|CD998141
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|211437810|gb|FL445238.1|FL445238
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|211253086|gb|FL453187.1|FL453187
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|32865027|gb|CF004709.1|CF004709
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGGGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|211389524|gb|FL368033.1|FL368033
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|84976663|gb|DW475085.1|DW475085
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|21759828|gb|BQ635369.1|BQ635369
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|16137348|gb|BI894213.1|BI894213
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|22819537|gb|BU499627.1|BU499627
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|31360690|gb|CD445047.1|CD445047
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|211166958|gb|FL442995.1|FL442995
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|21760033|gb|BQ635574.1|BQ635574
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|5006228|gb|AI712290.1|AI712290
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|22715310|gb|BU197696.1|BU197696
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|31353813|gb|CD438170.1|CD438170
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|15188208|gb|BI417185.1|BI417185
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|60393960|gb|DN226830.1|DN226830
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|15053657|gb|BI359202.1|BI359202
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|32846195|gb|CD985876.1|CD985876
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|33092120|gb|CF052114.1|CF052114
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|9952994|gb|BE639577.1|BE639577
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|76020606|gb|DT947776.1|DT947776
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|83279343|gb|DV943351.1|DV943351
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|60342152|gb|DN209125.1|DN209125
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|211519311|gb|FL433829.1|FL433829
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|60338815|gb|DN205788.1|DN205788
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|32858470|gb|CD998151.1|CD998151
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAANAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|31354798|gb|CD439155.1|CD439155
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|211121965|gb|FL441610.1|FL441610
EST:     GAGCTGAGAAGCCAGAGGTCCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: GAGCTGAGAAGCCAGAGGT-CCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|6526738|gb|AW216019.1|AW216019
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|213178013|gb|FM194374.1|FM194374
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|211170618|gb|FL462186.1|FL462186
EST:     AGAGCTGAGAAGCCAGAGGTCCSCGATGCTGCTARAGAAGCTGCTYTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|213178777|gb|FM183658.1|FM183658
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|60345067|gb|DN212040.1|DN212040
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|15177592|gb|BI398531.1|BI398531
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|32847325|gb|CD987006.1|CD987006
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|211155827|gb|FL453579.1|FL453579
EST:     AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
EST: gi|60343076|gb|DN210049.1|DN210049
EST:     AGAGCTGAAAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCG                         TGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA
genomic: AGAGCTGAGAAGCCAGAGGTCCGCGATGCTGCTAGAGAAGCTGCTCTTCGgtatgtctgc ... gaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagataccgatgctcaatacctctccgctcatttgaactgtcgtgaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAAGGCGGAGGTGAGCAAGTCCCAGAAGACGCAGACAAAGGGTGCGGTCCAG
                               atttgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtctgccagttctatattaccataacaaatagataccgatgctcaatacctctccgctcatttgaactgtcgtgaccatgcagTGAGATCAAGGAGCGCATCAAGAAGACCAAGGATGAGAAGAAAGCGAAGAAGGCGGAGGTGAGCAAGTCCCAGAAGACGCAGACAAAGGGTGCGGTCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG