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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattacaatttggttttgttttgcgcctaggctttgtttttgttgttgttgtatgtgctgaaaaaatgctcatagcttggaatgtttttgttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAG

Basic information

species Zea mays
transcript GRMZM2G142502_T03
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149014312|gb|EE043889.2|EE043889
EST:     GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAA                         CTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
genomic: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAAgtaagttatg ... ttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
EST: gi|78082996|gb|DV511389.1|DV511389
EST:     GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAA                         CTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
genomic: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAAgtaagttatg ... ttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
EST: gi|78081830|gb|DV510242.1|DV510242
EST:     GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAA                         CTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
genomic: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAAgtaagttatg ... ttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
EST: gi|211422460|gb|FK998906.1|FK998906
EST:     GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAA                         CTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
genomic: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAAgtaagttatg ... ttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
EST: gi|101399620|gb|EB821656.1|EB821656
EST:     GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAA                         CTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
genomic: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAAgtaagttatg ... ttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
EST: gi|71438193|gb|DR819243.1|DR819243
EST:     GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAA                         CTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
genomic: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAAgtaagttatg ... ttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
EST: gi|148970848|gb|EE021623.2|EE021623
EST:     GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAA                         CTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
genomic: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAAgtaagttatg ... ttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttgtatgtgctgaaaaaatgctcatagcttggaatgtttttgttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAG
                                     tgtttttgttctcttt  CT-rich tract
             tgaaaaaat  TA-rich tract