1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aattacaatttggttttgttttgcgcctaggctttgtttttgttgttgttgtatgtgctgaaaaaatgctcatagcttggaatgtttttgttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAG
species | Zea mays |
transcript | GRMZM2G142502_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAA CTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTEST: gi|71438193|gb|DR819243.1|DR819243
genomic: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAAgtaagttatg ... ttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
EST: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAA CTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTEST: gi|149014312|gb|EE043889.2|EE043889
genomic: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAAgtaagttatg ... ttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
EST: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAA CTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTEST: gi|148970848|gb|EE021623.2|EE021623
genomic: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAAgtaagttatg ... ttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
EST: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAA CTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTEST: gi|148959588|gb|EC905543.2|EC905543
genomic: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAAgtaagttatg ... ttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
EST: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAA CTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTEST: gi|211357440|gb|FL362287.1|FL362287
genomic: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAAgtaagttatg ... ttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
EST: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAA CTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTEST: gi|78082996|gb|DV511389.1|DV511389
genomic: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAAgtaagttatg ... ttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
EST: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAA CTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
genomic: GATTTTCCAAAGAATAGAGACCTTCTCGCTGCATTCTGGAATAAAgtaagttatg ... ttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATT
ttgttgtatgtgctgaaaaaatgctcatagcttggaatgtttttgttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAG
tgtttttgttctcttt CT-rich tract
tgaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattacaatttggttttgttttgcgcctaggctttgtttttgttgttgttgtatgtgctgaaaaaatgctcatagcttggaatgtttttgttctctttagCTCACTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAG
- - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - -gtttttg
- - - - - - - - - - - - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgctc