1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtactaattttcttttaccacgtctattcaaaattgcagacctgaattttaaactataattattcattattttgaagggcaacattcatttaaatggattctgatgcattatttcttttgtgaatcatatatatatatgatatgaagatgactttgtttcttctgcagTTACCAGCCGCCCATACCAGCTGACCAGGTCAGGCCAGCAGCTGACTTTGATCAGGATGCAG
species | Zea mays |
transcript | GRMZM2G142111_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTAATCACTATTAAATTGTCAAAGAAGGAGCTGGATACATCATCCCCAGG TTACCAGCCGCCCATACCAGCTGACCAGGTCGGGCCAGCAGCTGACTTTGAEST: gi|91874466|gb|EB404423.1|EB404423
genomic: TTAATCACTATTAAATTGTCAAAGAAGGAGCTGGATACATCATCCCCAGGgtactaattt ... tcttctgcagTTACCAGCCGCCCATACCAGCTGACCAGGTCAGGCCAGCAGCTGACTTTGA
EST: TTAATCACTATTAAATTGTCAAAGAAGGAGCTGGATACATCATCCCCAGG TTACCAGCCGCCCATACCAGCTGACCAGGTCAGGCCAGCAGCTGACTTTGAEST: gi|71435668|gb|DR816718.1|DR816718
genomic: TTAATCACTATTAAATTGTCAAAGAAGGAGCTGGATACATCATCCCCAGGgtactaattt ... tcttctgcagTTACCAGCCGCCCATACCAGCTGACCAGGTCAGGCCAGCAGCTGACTTTGA
EST: TTAATCACTATTAAATTGTCAAAGAAGGAGCTGGATACATCATCCCCAGG TTACCAGCCGCCCATACCAGCTGACCAGGTCAGGCCAGCAGCTGACTTTGAEST: gi|83278985|gb|DV942993.1|DV942993
genomic: TTAATCACTATTAAATTGTCAAAGAAGGAGCTGGATACATCATCCCCAGGgtactaattt ... tcttctgcagTTACCAGCCGCCCATACCAGCTGACCAGGTCAGGCCAGCAGCTGACTTTGA
EST: TTAATCACTATTAAATTGTCAAAGAAGGAGCTGGATACATCATCCCCAGG TTACCAGCCGCCCATACCAGCTGACCAGGTCAGGCCAGCAGCTGACTTTGA
genomic: TTAATCACTATTAAATTGTCAAAGAAGGAGCTGGATACATCATCCCCAGGgtactaattt ... tcttctgcagTTACCAGCCGCCCATACCAGCTGACCAGGTCAGGCCAGCAGCTGACTTTGA
tcttttgtgaatcatatatatatatgatatgaagatgactttgtttcttctgcagTTACCAGCCGCCCATACCAGCTGACCAGGTCAGGCCAGCAGCTGACTTTGATCAGGATGCAG
ctttgtttcttctgc CT-rich tract
aatcatatatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactaattttcttttaccacgtctattcaaaattgcagacctgaattttaaactataattattcattattttgaagggcaacattcatttaaatggattctgatgcattatttcttttgtgaatcatatatatatatgatatgaagatgactttgtttcttctgcagTTACCAGCCGCCCATACCAGCTGACCAGGTCAGGCCAGCAGCTGACTTTGATCAGGATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG