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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttcgccctgcatgtaacattcattttcttgctaacttatctagcttcctgagacctgaatccatggacatgttttgtccatgccccatccgaaaaaattgcagGTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGGGCTGGGGATTTTATATCAACTCGTGCTTTGTTCATTGTCAGTCGCTGAA

Basic information

species Zea mays
transcript GRMZM2G141873_T07
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141873_T03 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os05g02120.1 (Oryza sativa), 3'ss of exon 10
gttggttcgccctgcatgtaacattcattttcttgctaacttatctagcttcctgagacctgaatccatggacatgttttgtccatgccccatccgaaaaaattgcagGTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGGGCTGGGGATTTTATATCAACTCGTGCTTTGTTCATTGTCAGTCGCTGAA
||||  || || ||  |       | ||| | |   |||||||||   ||| | |      || |   | | |||||||| || ||     |     | |  |||||||||| |||||| |  | |||||  |||||||||||  |||||| |||| || |||||| |||| |||| |||| |||||| | || ||||||||| ||||
gttgagtcaccttgtgt------cttattatataattaacttatccgcctttcag------gattttgtagtcatgtttt-tctatatgaaac----atactttgcagGTTTTAGGAAAAAGTTACATGATACTATAAGTGAACTTAAGCACAAAAAGGACTGGGGCTTTTTTATCGACTCATGCTTTATACACTGTCAGTCGTTGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71417999|gb|DR804277.1|DR804277
EST:     CAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAG                         GTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGG
genomic: CAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAGgttggttcgc ... aaaattgcagGTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGG
EST: gi|71423226|gb|DR805987.1|DR805987
EST:     CAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAG                         GTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGG
genomic: CAGATTGGATATTAGCAAGTGCAGCCCTAAACAACTTGGAATTCTCCAAGgttggttcgc ... aaaattgcagGTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagacctgaatccatggacatgttttgtccatgccccatccgaaaaaattgcagGTTTCAGGAAAGAACTGCATGACGCTATAAGTGAAGCTAAGCAGAAAAGGGGCTGGGGATTTTATATCAACTCGTGCTTTGTTCATTGTCAGTCGCTGAA
                                           aaaaaatt  TA-rich tract