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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtctctggacctgaaatgtctacatgtttgggctgatgctccgtactggcatttctttgatcacatagttttctacctgttccctacttggcaacatgcaattttgagaattcgtgagcatgagaggacctcaacctcaatttctttatatttctattgatactggcaggccattggactgtcagGTACCAAGAAACCAATGAGGCTTGACCTTACAAATCAGAATTCAAGGGCTGAAAAGACGAAAGTTGGACCATTTGGATCCAAACTATTTGACTCTGCTGT

Basic information

species Zea mays
transcript GRMZM2G141185_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141185_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g64870.1 (Oryza sativa), 3'ss of exon 6
gtaggtctctggacctgaaatgtctacatgtttgggctgatgctccgtactggcatttctttgatcacatagttttctacctgttccctacttggcaacatgcaattttgagaattcgtgagcatgagaggacctcaacctcaatttctttatatttctattgatactggcaggccattggactgtcagGTACCAAGAAACCAATGAGGCTTGACCTTACAAATCAGAATTCAAGGGCTGAAAAGACGAAAGTTGGACCATTTGGATCCAAACTATTTGACTCTGCTGT
                                                                    || ||   ||         |||||||    | |    |||||  | ||||  || ||| || ||| |    | ||| | ||  |  |||  ||||||| |||||||||||||||||| || ||||||| |||||| ||| ||||||||||||| |||  |||||||||| ||| ||  | || ||||||||||||||||||| |                 
--------------------------------------------------------------------atggtcccctttaacaattctacttg-tggcttc---ttttggaatttcgcaag-atgtgatgactttgggcccaactcctccacctttacattgatattggcagGCCATTGGACTGACAAGTACCAATAAACCATTGAAGCTTGACCTTACAGATCGTAATTCAAGGGTTGAGAAAGCAAAGGTTGGACCATTTGGATCCAGAT----------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaacctcaatttctttatatttctattgatactggcaggccattggactgtcagGTACCAAGAAACCAATGAGGCTTGACCTTACAAATCAGAATTCAAGGGCTGAAAAGACGAAAGTTGGACCATTTGGATCCAAACTATTTGACTCTGCTGT
                        tattgat  putative branch site (score: 3)
        aatttctttatatttc  TA-rich tract